Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02990 and PS417_02995 are separated by 2 nucleotides PS417_02995 and PS417_03000 are separated by 182 nucleotides PS417_03000 and PS417_03005 are separated by 142 nucleotides
PS417_02990: PS417_02990 - hypothetical protein, at 684,487 to 685,554
_02990
PS417_02995: PS417_02995 - NUDIX hydrolase, at 685,557 to 686,093
_02995
PS417_03000: PS417_03000 - translation initiation factor Sui1, at 686,276 to 686,647
_03000
PS417_03005: PS417_03005 - arginine decarboxylase, at 686,790 to 688,703
_03005
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.560 kb on - strand at 684.610 kb on + strand, within PS417_02990 at 684.727 kb on + strand, within PS417_02990 at 684.728 kb on - strand, within PS417_02990 at 684.729 kb on + strand, within PS417_02990 at 685.081 kb on + strand, within PS417_02990 at 685.283 kb on - strand, within PS417_02990 at 685.496 kb on - strand at 685.496 kb on - strand at 685.702 kb on + strand, within PS417_02995 at 685.703 kb on - strand, within PS417_02995 at 685.819 kb on - strand, within PS417_02995 at 685.897 kb on - strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.929 kb on - strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 686.040 kb on + strand at 686.041 kb on - strand at 686.041 kb on - strand at 686.102 kb on - strand at 686.102 kb on - strand at 686.124 kb on - strand at 686.145 kb on + strand at 686.320 kb on - strand, within PS417_03000 at 686.320 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000 at 686.621 kb on + strand at 686.621 kb on + strand at 686.621 kb on + strand at 686.731 kb on + strand at 686.731 kb on + strand at 686.776 kb on + strand at 686.776 kb on + strand at 686.776 kb on + strand at 686.777 kb on - strand at 687.038 kb on - strand, within PS417_03005
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 684,560 - +1.2 684,610 + PS417_02990 0.12 +0.8 684,727 + PS417_02990 0.22 -2.7 684,728 - PS417_02990 0.23 +1.7 684,729 + PS417_02990 0.23 +1.3 685,081 + PS417_02990 0.56 +1.3 685,283 - PS417_02990 0.75 -0.7 685,496 - +0.4 685,496 - +0.1 685,702 + PS417_02995 0.27 +0.1 685,703 - PS417_02995 0.27 -0.6 685,819 - PS417_02995 0.49 +2.0 685,897 - PS417_02995 0.63 +2.1 685,928 + PS417_02995 0.69 +1.3 685,928 + PS417_02995 0.69 +0.3 685,929 - PS417_02995 0.69 +1.1 685,999 + PS417_02995 0.82 +0.7 685,999 + PS417_02995 0.82 +2.1 686,040 + +0.0 686,041 - -2.2 686,041 - +0.0 686,102 - +1.4 686,102 - -0.1 686,124 - +0.8 686,145 + +1.0 686,320 - PS417_03000 0.12 -0.2 686,320 - PS417_03000 0.12 -1.2 686,378 - PS417_03000 0.27 +0.0 686,378 - PS417_03000 0.27 +0.3 686,621 + +0.1 686,621 + +0.1 686,621 + -1.9 686,731 + -0.3 686,731 + -0.4 686,776 + +0.5 686,776 + +0.2 686,776 + -1.0 686,777 - -1.7 687,038 - PS417_03005 0.13 -0.4
Or see this region's nucleotide sequence