Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27210 and PS417_27215 are separated by 127 nucleotides PS417_27215 and PS417_27220 are separated by 84 nucleotides PS417_27220 and PS417_27225 are separated by 77 nucleotides
PS417_27210: PS417_27210 - AsnC family transcriptional regulator, at 5,875,270 to 5,875,740
_27210
PS417_27215: PS417_27215 - hypothetical protein, at 5,875,868 to 5,876,206
_27215
PS417_27220: PS417_27220 - type II secretion system protein E, at 5,876,291 to 5,877,970
_27220
PS417_27225: PS417_27225 - protease, at 5,878,048 to 5,878,968
_27225
Position (kb) 5876
5877
5878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5875.382 kb on + strand, within PS417_27210 at 5875.382 kb on + strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand at 5875.442 kb on + strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.742 kb on + strand at 5875.808 kb on - strand at 5875.889 kb on + strand at 5875.998 kb on - strand, within PS417_27215 at 5876.152 kb on + strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.217 kb on + strand at 5876.217 kb on + strand at 5876.218 kb on - strand at 5876.218 kb on - strand at 5876.251 kb on - strand at 5876.262 kb on + strand at 5876.489 kb on + strand, within PS417_27220 at 5876.489 kb on + strand, within PS417_27220 at 5876.490 kb on - strand, within PS417_27220 at 5876.705 kb on - strand, within PS417_27220 at 5876.941 kb on + strand, within PS417_27220 at 5876.967 kb on - strand, within PS417_27220 at 5876.997 kb on + strand, within PS417_27220 at 5877.103 kb on - strand, within PS417_27220 at 5877.300 kb on - strand, within PS417_27220 at 5877.300 kb on - strand, within PS417_27220 at 5877.553 kb on + strand, within PS417_27220 at 5877.553 kb on + strand, within PS417_27220 at 5877.554 kb on - strand, within PS417_27220 at 5877.608 kb on + strand, within PS417_27220 at 5877.609 kb on - strand, within PS417_27220 at 5877.817 kb on - strand at 5877.850 kb on + strand at 5877.850 kb on + strand at 5877.850 kb on + strand at 5877.851 kb on - strand at 5877.851 kb on - strand at 5877.915 kb on + strand at 5877.919 kb on - strand at 5877.998 kb on + strand at 5877.998 kb on + strand at 5877.999 kb on - strand at 5878.036 kb on + strand at 5878.065 kb on - strand at 5878.065 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.481 kb on + strand, within PS417_27225 at 5878.481 kb on + strand, within PS417_27225 at 5878.482 kb on - strand, within PS417_27225 at 5878.811 kb on - strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,875,382 + PS417_27210 0.24 -1.8 5,875,382 + PS417_27210 0.24 +0.4 5,875,383 - PS417_27210 0.24 -0.4 5,875,383 - PS417_27210 0.24 +0.3 5,875,442 + PS417_27210 0.37 +0.2 5,875,442 + PS417_27210 0.37 -0.3 5,875,442 + +0.5 5,875,442 + PS417_27210 0.37 -2.2 5,875,443 - PS417_27210 0.37 +1.3 5,875,443 - PS417_27210 0.37 +0.9 5,875,742 + +0.0 5,875,808 - +0.4 5,875,889 + -0.6 5,875,998 - PS417_27215 0.38 +0.5 5,876,152 + PS417_27215 0.84 +0.3 5,876,153 - PS417_27215 0.84 +0.5 5,876,153 - PS417_27215 0.84 -2.8 5,876,217 + -0.1 5,876,217 + -0.4 5,876,218 - +0.4 5,876,218 - -1.0 5,876,251 - -1.0 5,876,262 + +0.2 5,876,489 + PS417_27220 0.12 +0.2 5,876,489 + PS417_27220 0.12 +0.1 5,876,490 - PS417_27220 0.12 -1.6 5,876,705 - PS417_27220 0.25 +2.5 5,876,941 + PS417_27220 0.39 +0.4 5,876,967 - PS417_27220 0.40 -1.6 5,876,997 + PS417_27220 0.42 +1.3 5,877,103 - PS417_27220 0.48 +2.9 5,877,300 - PS417_27220 0.60 +1.3 5,877,300 - PS417_27220 0.60 +2.1 5,877,553 + PS417_27220 0.75 -1.0 5,877,553 + PS417_27220 0.75 +1.1 5,877,554 - PS417_27220 0.75 +0.4 5,877,608 + PS417_27220 0.78 +0.4 5,877,609 - PS417_27220 0.78 +0.4 5,877,817 - +1.2 5,877,850 + +0.5 5,877,850 + -0.1 5,877,850 + +0.4 5,877,851 - -1.0 5,877,851 - -0.1 5,877,915 + -0.0 5,877,919 - -2.8 5,877,998 + +0.7 5,877,998 + +0.2 5,877,999 - -0.6 5,878,036 + +1.2 5,878,065 - -0.3 5,878,065 - +0.0 5,878,101 - -0.1 5,878,101 - -3.1 5,878,101 - +0.5 5,878,101 - -0.2 5,878,481 + PS417_27225 0.47 -0.3 5,878,481 + PS417_27225 0.47 +0.0 5,878,482 - PS417_27225 0.47 +1.1 5,878,811 - PS417_27225 0.83 +1.0 5,878,828 + PS417_27225 0.85 +0.5 5,878,828 + PS417_27225 0.85 -0.4
Or see this region's nucleotide sequence