Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02645 and PS417_02650 are separated by 179 nucleotides PS417_02650 and PS417_02655 are separated by 374 nucleotides
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040
_02655
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 605.668 kb on + strand, within PS417_02645 at 605.669 kb on - strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.992 kb on + strand at 606.023 kb on - strand at 606.054 kb on + strand at 606.055 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.224 kb on + strand at 606.224 kb on + strand at 606.225 kb on - strand at 606.586 kb on - strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.802 kb on - strand, within PS417_02650 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.213 kb on - strand, within PS417_02650 at 607.245 kb on + strand, within PS417_02650 at 607.386 kb on + strand, within PS417_02650 at 607.386 kb on + strand at 607.390 kb on + strand, within PS417_02650 at 607.390 kb on + strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.463 kb on + strand at 607.464 kb on - strand at 607.473 kb on + strand at 607.495 kb on - strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.728 kb on + strand at 607.735 kb on + strand at 607.779 kb on + strand at 607.919 kb on + strand at 608.045 kb on + strand, within PS417_02655 at 608.045 kb on + strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.250 kb on - strand, within PS417_02655 at 608.332 kb on + strand at 608.332 kb on + strand, within PS417_02655 at 608.333 kb on - strand, within PS417_02655 at 608.375 kb on + strand, within PS417_02655 at 608.433 kb on - strand, within PS417_02655
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 605,668 + PS417_02645 0.73 +0.3 605,669 - PS417_02645 0.73 +0.4 605,671 + PS417_02645 0.73 -0.3 605,671 + PS417_02645 0.73 -1.2 605,671 + PS417_02645 0.73 +0.8 605,671 + PS417_02645 0.73 +0.0 605,672 - PS417_02645 0.74 +0.4 605,672 - PS417_02645 0.74 -0.3 605,746 + PS417_02645 0.78 -1.7 605,746 + PS417_02645 0.78 +0.3 605,992 + -0.3 606,023 - -1.0 606,054 + -0.2 606,055 - +0.1 606,139 + -0.4 606,140 - +0.5 606,224 + +0.4 606,224 + -1.1 606,225 - +0.1 606,586 - PS417_02650 0.26 -2.4 606,604 + PS417_02650 0.28 +4.2 606,604 + PS417_02650 0.28 -0.5 606,802 - PS417_02650 0.43 -2.1 606,958 - PS417_02650 0.55 -0.9 607,009 - PS417_02650 0.59 -0.1 607,009 - PS417_02650 0.59 -0.0 607,011 + PS417_02650 0.60 -0.6 607,012 - PS417_02650 0.60 +1.4 607,212 + PS417_02650 0.75 -0.8 607,212 + PS417_02650 0.75 -1.0 607,213 - PS417_02650 0.75 -0.4 607,245 + PS417_02650 0.78 -1.0 607,386 + PS417_02650 0.89 -0.5 607,386 + +0.4 607,390 + PS417_02650 0.89 -0.2 607,390 + PS417_02650 0.89 -2.7 607,391 - PS417_02650 0.89 -0.5 607,391 - PS417_02650 0.89 +0.1 607,391 - PS417_02650 0.89 -1.3 607,463 + -0.6 607,464 - -0.5 607,473 + +0.2 607,495 - -0.1 607,666 + -0.6 607,667 - -1.2 607,728 + -0.4 607,735 + +0.3 607,779 + -0.0 607,919 + -0.4 608,045 + PS417_02655 0.12 -0.4 608,045 + PS417_02655 0.12 -1.5 608,046 - PS417_02655 0.12 -0.1 608,046 - PS417_02655 0.12 +0.3 608,249 + PS417_02655 0.30 +1.6 608,249 + PS417_02655 0.30 -0.4 608,249 + PS417_02655 0.30 -0.2 608,250 - PS417_02655 0.30 +0.6 608,332 + +1.4 608,332 + PS417_02655 0.38 -0.3 608,333 - PS417_02655 0.38 +1.2 608,375 + PS417_02655 0.41 -0.0 608,433 - PS417_02655 0.47 -2.0
Or see this region's nucleotide sequence