Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02350 and PS417_02355 are separated by 462 nucleotides PS417_02355 and PS417_02360 are separated by 166 nucleotides
PS417_02350: PS417_02350 - channel protein TolC, at 536,476 to 537,915
_02350
PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270
_02355
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.810 kb on - strand at 537.966 kb on - strand at 538.012 kb on + strand at 538.012 kb on + strand at 538.013 kb on - strand at 538.102 kb on + strand at 538.102 kb on + strand at 538.103 kb on - strand at 538.349 kb on + strand at 538.579 kb on + strand at 538.597 kb on + strand, within PS417_02355 at 538.598 kb on - strand, within PS417_02355 at 538.667 kb on + strand, within PS417_02355 at 538.668 kb on - strand, within PS417_02355 at 538.813 kb on + strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.850 kb on - strand, within PS417_02355 at 538.926 kb on + strand, within PS417_02355 at 538.927 kb on - strand, within PS417_02355 at 539.131 kb on - strand, within PS417_02355 at 539.347 kb on + strand, within PS417_02355 at 539.347 kb on + strand at 539.348 kb on - strand, within PS417_02355 at 539.479 kb on + strand, within PS417_02355 at 539.518 kb on + strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.741 kb on - strand, within PS417_02355 at 539.912 kb on - strand, within PS417_02355 at 540.055 kb on + strand, within PS417_02355 at 540.339 kb on - strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.871 kb on - strand, within PS417_02360 at 540.871 kb on - strand, within PS417_02360 at 541.211 kb on + strand, within PS417_02360
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 537,810 - +0.9 537,966 - +0.1 538,012 + +0.5 538,012 + -0.5 538,013 - -0.0 538,102 + -0.3 538,102 + +1.1 538,103 - -0.2 538,349 + +0.6 538,579 + -0.4 538,597 + PS417_02355 0.12 -1.3 538,598 - PS417_02355 0.12 -0.1 538,667 + PS417_02355 0.15 +1.3 538,668 - PS417_02355 0.15 -0.9 538,813 + PS417_02355 0.23 -2.0 538,814 - PS417_02355 0.23 -1.5 538,814 - PS417_02355 0.23 -1.4 538,814 - PS417_02355 0.23 +0.4 538,850 - PS417_02355 0.25 -1.4 538,926 + PS417_02355 0.29 -0.8 538,927 - PS417_02355 0.29 -0.6 539,131 - PS417_02355 0.40 -1.6 539,347 + PS417_02355 0.51 -0.6 539,347 + -0.9 539,348 - PS417_02355 0.51 -2.1 539,479 + PS417_02355 0.58 -0.8 539,518 + PS417_02355 0.60 +0.3 539,519 - PS417_02355 0.60 -0.5 539,519 - PS417_02355 0.60 -0.6 539,741 - PS417_02355 0.72 -0.7 539,912 - PS417_02355 0.81 -1.0 540,055 + PS417_02355 0.89 +0.4 540,339 - +2.0 540,458 + -1.1 540,459 - -0.6 540,871 - PS417_02360 0.34 -1.0 540,871 - PS417_02360 0.34 +0.1 541,211 + PS417_02360 0.60 +0.2
Or see this region's nucleotide sequence