Strain Fitness in Pseudomonas simiae WCS417 around PS417_22165

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,801,372	+				+1.4
4,801,372	+				+0.2
4,801,511	-		PS417_22160	0.22	-0.3
4,801,570	+		PS417_22160	0.28	-0.1
4,801,570	+		PS417_22160	0.28	-0.1
4,801,570	+		PS417_22160	0.28	-0.9
4,801,571	-		PS417_22160	0.28	+0.2
4,801,571	-		PS417_22160	0.28	+0.0
4,801,619	-		PS417_22160	0.33	+0.5
4,801,945	+		PS417_22160	0.65	-1.0
4,801,946	-		PS417_22160	0.65	+2.5
4,802,051	-		PS417_22160	0.76	+0.2
4,802,051	-		PS417_22160	0.76	-1.7
4,802,051	-		PS417_22160	0.76	+0.3
4,802,290	+				-0.2
4,802,293	+				+0.2
4,802,293	+				-0.4
4,802,293	+				+1.0
4,802,294	-				+0.1
4,802,294	-				-0.6
4,802,294	-				-0.5
4,802,294	-				+0.3
4,802,294	-				+1.5
4,802,294	-				+0.5
4,802,294	-				-0.2
4,802,294	-				-1.4
4,802,297	-				-0.1
4,802,438	+		PS417_22165	0.11	-1.1
4,802,461	-		PS417_22165	0.13	-2.6
4,802,482	+		PS417_22165	0.15	-0.5
4,802,560	-		PS417_22165	0.24	-0.8
4,802,581	+		PS417_22165	0.27	-0.9
4,802,582	-				+0.9
4,802,582	-		PS417_22165	0.27	+0.0
4,802,624	+		PS417_22165	0.31	-0.5
4,803,226	-				-0.2
4,803,280	-				-0.5
4,803,321	+				+0.5
4,803,322	-				-0.2
4,803,323	+				-0.5
4,803,324	-				-0.9
4,803,324	-				-0.8
4,803,402	+		PS417_22170	0.16	-1.0
4,803,402	+		PS417_22170	0.16	+0.0
4,803,403	-		PS417_22170	0.17	+1.0
4,803,403	-		PS417_22170	0.17	+0.1
4,803,654	+				-2.8
4,803,706	+				+0.1
4,803,706	+				+0.0
4,803,707	-				-1.5
4,803,736	-				-0.5
4,803,742	+				+0.2
4,803,743	-				+2.3
4,803,820	-		PS417_22175	0.13	+0.7
4,804,178	+		PS417_22175	0.72	+0.3