Strain Fitness in Pseudomonas simiae WCS417 around PS417_02160

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02155 and PS417_02160 are separated by 278 nucleotidesPS417_02160 and PS417_02165 overlap by 4 nucleotidesPS417_02165 and PS417_02170 overlap by 4 nucleotides PS417_02155: PS417_02155 - chemotaxis protein, at 482,596 to 484,221 _02155 PS417_02160: PS417_02160 - hypothetical protein, at 484,500 to 484,730 _02160 PS417_02165: PS417_02165 - ZapA, at 484,727 to 485,020 _02165 PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819 _02170 Position (kb) 484 485Strain fitness (log2 ratio) -2 -1 0 1 2at 483.583 kb on - strand, within PS417_02155at 483.848 kb on + strand, within PS417_02155at 483.869 kb on + strand, within PS417_02155at 483.878 kb on + strand, within PS417_02155at 484.201 kb on - strandat 484.206 kb on + strandat 484.209 kb on + strandat 484.210 kb on - strandat 484.303 kb on - strandat 484.381 kb on + strandat 484.683 kb on - strand, within PS417_02160at 484.859 kb on + strand, within PS417_02165at 484.859 kb on + strand, within PS417_02165at 484.884 kb on + strand, within PS417_02165at 484.885 kb on - strand, within PS417_02165at 485.096 kb on - strandat 485.226 kb on + strand, within PS417_02170at 485.525 kb on + strand, within PS417_02170at 485.526 kb on - strand, within PS417_02170at 485.528 kb on + strand, within PS417_02170at 485.529 kb on - strand, within PS417_02170at 485.529 kb on - strand, within PS417_02170at 485.529 kb on - strand, within PS417_02170at 485.556 kb on - strand, within PS417_02170at 485.647 kb on + strand, within PS417_02170

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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483,583 - PS417_02155 0.61 +0.1
483,848 + PS417_02155 0.77 -0.0
483,869 + PS417_02155 0.78 +0.3
483,878 + PS417_02155 0.79 -0.1
484,201 - -2.4
484,206 + +0.3
484,209 + -1.0
484,210 - -0.3
484,303 - -0.1
484,381 + +0.1
484,683 - PS417_02160 0.79 -1.0
484,859 + PS417_02165 0.45 -0.1
484,859 + PS417_02165 0.45 -0.8
484,884 + PS417_02165 0.53 +2.0
484,885 - PS417_02165 0.54 +0.1
485,096 - -0.0
485,226 + PS417_02170 0.12 -0.4
485,525 + PS417_02170 0.28 -0.9
485,526 - PS417_02170 0.28 -0.2
485,528 + PS417_02170 0.28 -0.4
485,529 - PS417_02170 0.28 +0.2
485,529 - PS417_02170 0.28 -0.7
485,529 - PS417_02170 0.28 +1.4
485,556 - PS417_02170 0.30 -0.8
485,647 + PS417_02170 0.35 +0.3

Or see this region's nucleotide sequence