Strain Fitness in Pseudomonas simiae WCS417 around PS417_20240

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,395,282	+				-0.8
4,395,337	+				+0.5
4,395,509	-				+0.5
4,395,762	+		PS417_20235	0.37	-1.2
4,395,762	+		PS417_20235	0.37	-0.7
4,395,762	+		PS417_20235	0.37	-0.0
4,395,763	-		PS417_20235	0.37	+0.7
4,395,763	-				-1.8
4,395,763	-		PS417_20235	0.37	-1.8
4,395,763	-		PS417_20235	0.37	-0.5
4,395,880	+		PS417_20235	0.54	-1.6
4,395,880	+		PS417_20235	0.54	-0.3
4,395,881	-		PS417_20235	0.54	-1.0
4,395,994	-		PS417_20235	0.69	-0.3
4,396,047	-		PS417_20235	0.77	-1.5
4,396,111	-		PS417_20235	0.86	-1.2
4,396,149	+				-0.1
4,396,209	+				+0.3
4,396,209	+				-0.4
4,396,210	-				+0.3
4,396,299	+				-0.6
4,396,308	+				-1.1
4,396,309	-				+0.1
4,396,309	-				+0.8
4,396,309	-				+0.1
4,396,311	+				+0.3
4,396,312	-				+0.8
4,396,366	+				-1.1
4,396,381	-		PS417_20240	0.12	-0.4
4,396,403	+		PS417_20240	0.14	-0.1
4,396,557	+		PS417_20240	0.32	-0.4
4,396,712	+		PS417_20240	0.50	-0.5
4,396,997	+		PS417_20240	0.83	+0.1
4,396,998	-		PS417_20240	0.83	-1.2
4,397,119	+				-0.7
4,397,120	-				+0.1
4,397,120	-				+1.8
4,397,120	-				-1.7
4,397,411	+		PS417_20245	0.31	+0.3
4,397,591	-		PS417_20245	0.52	+0.5
4,397,591	-		PS417_20245	0.52	+0.2
4,397,912	+				-0.2
4,397,912	+				-1.2
4,397,913	-				-0.5
4,397,913	-				+0.2
4,398,070	+		PS417_20250	0.20	-0.1
4,398,116	+		PS417_20250	0.32	-0.6
4,398,116	+		PS417_20250	0.32	-0.2
4,398,117	-		PS417_20250	0.32	-0.4
4,398,117	-		PS417_20250	0.32	+0.5