Strain Fitness in Pseudomonas simiae WCS417 around PS417_18215

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,967,475	-				-1.1
3,967,566	+		PS417_18210	0.10	-0.0
3,967,567	-		PS417_18210	0.10	-0.1
3,967,569	-		PS417_18210	0.11	+0.0
3,967,570	+		PS417_18210	0.11	+0.1
3,967,570	+		PS417_18210	0.11	+0.6
3,967,571	-		PS417_18210	0.11	-1.8
3,967,571	-		PS417_18210	0.11	-0.1
3,967,614	-		PS417_18210	0.15	-0.9
3,967,635	+		PS417_18210	0.17	+1.1
3,967,874	+		PS417_18210	0.41	+0.1
3,967,874	+		PS417_18210	0.41	-0.1
3,967,875	-		PS417_18210	0.41	-0.0
3,967,993	-		PS417_18210	0.53	+0.7
3,968,133	+		PS417_18210	0.67	-0.2
3,968,133	+		PS417_18210	0.67	-1.5
3,968,133	+		PS417_18210	0.67	-0.8
3,968,134	-		PS417_18210	0.67	+0.7
3,968,136	-		PS417_18210	0.67	-0.9
3,968,256	+		PS417_18210	0.79	-0.8
3,968,258	+		PS417_18210	0.79	-0.5
3,968,258	+		PS417_18210	0.79	+0.9
3,968,400	-				+0.5
3,968,705	+		PS417_18215	0.25	-0.0
3,968,706	-		PS417_18215	0.25	+0.2
3,968,706	-		PS417_18215	0.25	+0.3
3,968,706	-		PS417_18215	0.25	+0.3
3,968,774	+		PS417_18215	0.32	+0.8
3,968,782	+		PS417_18215	0.33	+0.3
3,968,783	-		PS417_18215	0.33	+1.9
3,969,168	+		PS417_18215	0.74	+0.6
3,969,168	+		PS417_18215	0.74	+0.2
3,969,264	-		PS417_18215	0.84	-0.1
3,969,454	+				-0.1
3,969,455	-				-0.7
3,969,773	+				+0.6
3,969,782	+				+0.1
3,969,783	-				+0.1
3,969,852	-				-0.2
3,969,852	-				+0.1
3,969,959	-				-2.3
3,970,107	-		PS417_18220	0.13	-0.0
3,970,246	+		PS417_18220	0.26	-0.6
3,970,247	-		PS417_18220	0.26	+1.2
3,970,314	+		PS417_18220	0.32	-0.5
3,970,315	-		PS417_18220	0.32	+0.3
3,970,361	+		PS417_18220	0.37	-0.5
3,970,409	+		PS417_18220	0.41	+0.3
3,970,409	+		PS417_18220	0.41	-1.7