Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01660 and PS417_01665 are separated by 139 nucleotides PS417_01665 and PS417_01670 are separated by 206 nucleotides PS417_01670 and PS417_01675 are separated by 238 nucleotides
PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360
_01660
PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320
_01665
PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961
_01670
PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650
_01675
Position (kb) 365
366
367
368 Strain fitness (log2 ratio) -2
-1
0
1
2 at 365.442 kb on - strand at 367.323 kb on + strand at 367.536 kb on - strand at 367.582 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.671 kb on - strand, within PS417_01670 at 367.817 kb on + strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.893 kb on - strand, within PS417_01670 at 367.904 kb on - strand, within PS417_01670 at 368.062 kb on - strand at 368.104 kb on + strand at 368.105 kb on - strand at 368.138 kb on + strand at 368.158 kb on - strand at 368.164 kb on + strand at 368.165 kb on - strand at 368.177 kb on + strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.268 kb on + strand at 368.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 365,442 - -1.8 367,323 + -0.9 367,536 - -0.3 367,582 + PS417_01670 0.13 +0.9 367,652 + PS417_01670 0.29 -0.2 367,652 + PS417_01670 0.29 -0.8 367,653 - PS417_01670 0.29 +0.3 367,653 - PS417_01670 0.29 -0.3 367,653 - PS417_01670 0.29 +0.6 367,671 - PS417_01670 0.33 +0.9 367,817 + PS417_01670 0.67 +0.2 367,818 - PS417_01670 0.67 -0.1 367,818 - PS417_01670 0.67 +1.0 367,892 + PS417_01670 0.84 +1.4 367,892 + PS417_01670 0.84 -0.1 367,893 - PS417_01670 0.84 +0.6 367,904 - PS417_01670 0.87 +1.9 368,062 - +1.4 368,104 + -0.0 368,105 - +0.5 368,138 + -1.4 368,158 - +0.8 368,164 + +0.4 368,165 - -0.2 368,177 + +0.7 368,178 - -1.1 368,178 - -0.0 368,178 - -0.7 368,268 + +1.2 368,268 + -0.8
Or see this region's nucleotide sequence