Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01555 and PS417_01560 are separated by 231 nucleotides PS417_01560 and PS417_01565 overlap by 1 nucleotides PS417_01565 and PS417_01570 are separated by 0 nucleotides PS417_01570 and PS417_01575 are separated by 39 nucleotides
PS417_01555: PS417_01555 - MFS transporter, at 344,265 to 345,926
_01555
PS417_01560: PS417_01560 - imidazoleglycerol-phosphate dehydratase, at 346,158 to 346,751
_01560
PS417_01565: PS417_01565 - imidazole glycerol phosphate synthase, at 346,751 to 347,389
_01565
PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647
_01570
PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 347,687 to 348,424
_01575
Position (kb) 346
347 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 345.351 kb on - strand, within PS417_01555 at 345.351 kb on - strand, within PS417_01555 at 345.355 kb on - strand, within PS417_01555 at 345.355 kb on - strand, within PS417_01555 at 345.465 kb on + strand, within PS417_01555 at 345.466 kb on - strand, within PS417_01555 at 345.597 kb on + strand, within PS417_01555 at 345.597 kb on + strand, within PS417_01555 at 345.598 kb on - strand, within PS417_01555 at 345.598 kb on - strand, within PS417_01555 at 345.661 kb on - strand, within PS417_01555 at 345.661 kb on - strand, within PS417_01555 at 345.729 kb on + strand, within PS417_01555 at 345.914 kb on - strand at 345.955 kb on - strand at 345.986 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.115 kb on - strand at 346.116 kb on + strand at 346.116 kb on + strand at 346.169 kb on + strand at 346.170 kb on - strand at 346.170 kb on - strand at 346.406 kb on + strand, within PS417_01560 at 346.407 kb on - strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.524 kb on + strand, within PS417_01560 at 346.822 kb on - strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.217 kb on - strand, within PS417_01565 at 347.492 kb on - strand, within PS417_01570 at 347.558 kb on + strand, within PS417_01570 at 347.559 kb on - strand, within PS417_01570 at 347.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 345,351 - PS417_01555 0.65 -0.0 345,351 - PS417_01555 0.65 -0.3 345,355 - PS417_01555 0.66 -0.6 345,355 - PS417_01555 0.66 +0.6 345,465 + PS417_01555 0.72 +1.1 345,466 - PS417_01555 0.72 -1.2 345,597 + PS417_01555 0.80 -0.5 345,597 + PS417_01555 0.80 -0.6 345,598 - PS417_01555 0.80 -0.1 345,598 - PS417_01555 0.80 -0.0 345,661 - PS417_01555 0.84 +0.1 345,661 - PS417_01555 0.84 -3.0 345,729 + PS417_01555 0.88 -0.4 345,914 - -0.6 345,955 - +0.2 345,986 + +0.6 346,042 + +0.0 346,042 + -1.2 346,042 + -2.8 346,042 + -0.2 346,042 + +1.2 346,042 + +0.5 346,043 - +1.7 346,043 - +0.0 346,043 - +0.3 346,115 - -0.0 346,116 + -1.5 346,116 + -0.2 346,169 + -3.6 346,170 - -2.0 346,170 - -4.5 346,406 + PS417_01560 0.42 -1.3 346,407 - PS417_01560 0.42 -2.2 346,446 + PS417_01560 0.48 -0.8 346,446 + PS417_01560 0.48 -3.2 346,524 + PS417_01560 0.62 -1.6 346,822 - PS417_01565 0.11 -3.3 347,216 + PS417_01565 0.73 -1.7 347,216 + PS417_01565 0.73 -2.5 347,217 - PS417_01565 0.73 -2.7 347,492 - PS417_01570 0.40 -3.1 347,558 + PS417_01570 0.65 +0.0 347,559 - PS417_01570 0.66 -2.2 347,730 + -3.5
Or see this region's nucleotide sequence