Strain Fitness in Pseudomonas simiae WCS417 around PS417_15185

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,326,750	+				+1.4
3,327,189	-		PS417_15180	0.39	-0.3
3,327,192	+		PS417_15180	0.40	-0.4
3,327,192	+		PS417_15180	0.40	-0.6
3,327,193	-		PS417_15180	0.40	-0.7
3,327,193	-		PS417_15180	0.40	+0.1
3,327,193	-		PS417_15180	0.40	-0.2
3,327,368	-		PS417_15180	0.59	-0.8
3,327,368	-				+1.5
3,327,515	-		PS417_15180	0.76	-0.2
3,327,721	+				+0.6
3,327,721	+				-0.5
3,327,722	-				+2.1
3,327,996	+		PS417_15185	0.20	+0.0
3,328,019	-		PS417_15185	0.21	-0.6
3,328,022	+		PS417_15185	0.22	-1.9
3,328,215	-		PS417_15185	0.36	+1.3
3,328,512	+		PS417_15185	0.58	+0.3
3,328,512	+		PS417_15185	0.58	+2.7
3,328,527	+		PS417_15185	0.59	+1.3
3,328,528	-		PS417_15185	0.59	-0.5
3,328,531	+		PS417_15185	0.59	-0.5
3,328,532	-		PS417_15185	0.60	-0.6
3,328,532	-				-0.0
3,328,600	+		PS417_15185	0.65	+0.8
3,328,601	-		PS417_15185	0.65	+1.1
3,328,777	+		PS417_15185	0.78	+0.1
3,328,777	+		PS417_15185	0.78	-2.5
3,328,778	-				+2.3
3,328,778	-		PS417_15185	0.78	+0.9
3,328,778	-		PS417_15185	0.78	-0.2
3,328,778	-		PS417_15185	0.78	+0.2
3,328,778	-		PS417_15185	0.78	+0.5
3,328,778	-				-1.8
3,328,778	-		PS417_15185	0.78	+1.2
3,329,057	+				-0.2
3,329,057	+				-1.8
3,329,063	-				-0.6
3,329,075	+				-2.2
3,329,075	+				-0.3
3,329,075	+				-0.4
3,329,076	-				+0.2
3,329,076	-				-0.0
3,329,076	-				+0.1
3,329,076	-				+1.7
3,329,079	+				-0.5
3,329,079	+				-1.1
3,329,080	-				-2.2
3,329,210	-				+0.4
3,329,360	+				+0.6
3,329,370	-				+0.4
3,329,458	-				+1.0
3,329,458	-				-0.0
3,329,867	+		PS417_15190	0.25	-0.3
3,329,868	-		PS417_15190	0.25	-0.2
3,329,868	-		PS417_15190	0.25	+0.7
3,329,884	-		PS417_15190	0.26	-0.9
3,329,905	-		PS417_15190	0.27	+0.4
3,329,969	-		PS417_15190	0.29	+0.1
3,329,999	+		PS417_15190	0.31	+0.6
3,329,999	+		PS417_15190	0.31	-0.9
3,329,999	+		PS417_15190	0.31	-0.1