Strain Fitness in Pseudomonas simiae WCS417 around PS417_01380

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01370 and PS417_01375 are separated by 14 nucleotidesPS417_01375 and PS417_01380 are separated by 37 nucleotidesPS417_01380 and PS417_01385 are separated by 519 nucleotides PS417_01370: PS417_01370 - peptidase M48, at 298,541 to 300,118 _01370 PS417_01375: PS417_01375 - hypothetical protein, at 300,133 to 300,498 _01375 PS417_01380: PS417_01380 - nucleotide cyclase, at 300,536 to 301,876 _01380 PS417_01385: PS417_01385 - NAD-dependent dehydratase, at 302,396 to 303,328 _01385 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 299.642 kb on + strand, within PS417_01370at 299.642 kb on + strand, within PS417_01370at 299.642 kb on + strand, within PS417_01370at 299.643 kb on - strand, within PS417_01370at 299.643 kb on - strandat 299.643 kb on - strand, within PS417_01370at 299.841 kb on + strand, within PS417_01370at 299.860 kb on + strand, within PS417_01370at 299.914 kb on - strand, within PS417_01370at 299.914 kb on - strand, within PS417_01370at 299.955 kb on + strand, within PS417_01370at 299.956 kb on - strand, within PS417_01370at 299.956 kb on - strand, within PS417_01370at 299.956 kb on - strand, within PS417_01370at 299.958 kb on + strand, within PS417_01370at 299.959 kb on - strand, within PS417_01370at 299.977 kb on + strandat 299.985 kb on + strandat 299.986 kb on - strandat 299.986 kb on - strandat 299.986 kb on - strandat 299.986 kb on - strandat 300.105 kb on - strandat 300.134 kb on + strandat 300.135 kb on - strandat 300.217 kb on + strand, within PS417_01375at 300.320 kb on + strand, within PS417_01375at 300.320 kb on + strand, within PS417_01375at 300.320 kb on + strand, within PS417_01375at 300.320 kb on + strand, within PS417_01375at 300.321 kb on - strandat 300.381 kb on + strand, within PS417_01375at 300.596 kb on + strandat 300.596 kb on + strandat 300.597 kb on - strandat 300.865 kb on - strand, within PS417_01380at 301.072 kb on + strand, within PS417_01380at 301.073 kb on - strand, within PS417_01380at 301.073 kb on - strand, within PS417_01380at 301.074 kb on + strand, within PS417_01380at 301.075 kb on - strand, within PS417_01380at 301.340 kb on + strand, within PS417_01380at 301.526 kb on + strand, within PS417_01380at 301.625 kb on + strand, within PS417_01380at 301.856 kb on - strandat 301.966 kb on + strandat 301.967 kb on - strandat 301.967 kb on - strandat 301.967 kb on - strandat 301.967 kb on - strandat 302.029 kb on - strandat 302.081 kb on + strandat 302.081 kb on + strandat 302.082 kb on - strandat 302.341 kb on + strandat 302.382 kb on - strandat 302.404 kb on - strandat 302.438 kb on - strandat 302.477 kb on + strandat 302.512 kb on + strand, within PS417_01385at 302.832 kb on - strand, within PS417_01385at 302.859 kb on - strand, within PS417_01385at 302.859 kb on - strandat 302.861 kb on + strand, within PS417_01385at 302.874 kb on - strand, within PS417_01385

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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299,642 + PS417_01370 0.70 +0.4
299,642 + PS417_01370 0.70 +0.2
299,642 + PS417_01370 0.70 -0.5
299,643 - PS417_01370 0.70 -0.0
299,643 - +1.9
299,643 - PS417_01370 0.70 +0.8
299,841 + PS417_01370 0.82 -0.8
299,860 + PS417_01370 0.84 -0.9
299,914 - PS417_01370 0.87 +0.3
299,914 - PS417_01370 0.87 +1.5
299,955 + PS417_01370 0.90 -0.9
299,956 - PS417_01370 0.90 -0.4
299,956 - PS417_01370 0.90 -0.7
299,956 - PS417_01370 0.90 -0.1
299,958 + PS417_01370 0.90 +0.0
299,959 - PS417_01370 0.90 -0.2
299,977 + +0.3
299,985 + -0.9
299,986 - -1.9
299,986 - +0.3
299,986 - +0.7
299,986 - +1.5
300,105 - +0.1
300,134 + -1.7
300,135 - -1.4
300,217 + PS417_01375 0.23 +0.2
300,320 + PS417_01375 0.51 +0.1
300,320 + PS417_01375 0.51 -0.0
300,320 + PS417_01375 0.51 +1.1
300,320 + PS417_01375 0.51 +1.1
300,321 - +0.1
300,381 + PS417_01375 0.68 -0.5
300,596 + -0.8
300,596 + +1.9
300,597 - +0.4
300,865 - PS417_01380 0.25 -0.6
301,072 + PS417_01380 0.40 -0.5
301,073 - PS417_01380 0.40 -0.6
301,073 - PS417_01380 0.40 -1.7
301,074 + PS417_01380 0.40 -0.6
301,075 - PS417_01380 0.40 -0.9
301,340 + PS417_01380 0.60 +0.2
301,526 + PS417_01380 0.74 -0.7
301,625 + PS417_01380 0.81 +1.4
301,856 - -0.6
301,966 + -0.3
301,967 - +0.5
301,967 - +0.8
301,967 - -0.7
301,967 - -1.8
302,029 - +1.1
302,081 + -0.2
302,081 + -0.6
302,082 - +0.5
302,341 + -0.7
302,382 - +1.7
302,404 - +2.2
302,438 - -0.1
302,477 + +0.3
302,512 + PS417_01385 0.12 +0.8
302,832 - PS417_01385 0.47 -1.5
302,859 - PS417_01385 0.50 +0.2
302,859 - +0.4
302,861 + PS417_01385 0.50 +0.4
302,874 - PS417_01385 0.51 -0.9

Or see this region's nucleotide sequence