Strain Fitness in Pseudomonas simiae WCS417 around PS417_07115

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,572,170	+				-0.6
1,572,170	+				-0.6
1,572,170	+				+0.2
1,572,170	+				+0.5
1,572,193	+				+0.2
1,572,193	+				-0.6
1,572,246	-				-2.1
1,572,246	-				-0.3
1,572,247	+				+0.3
1,572,247	+				-1.2
1,572,527	+				+0.7
1,572,528	-				-0.0
1,572,528	-				-1.6
1,572,530	+				-0.6
1,572,576	+		PS417_07110	0.14	+0.1
1,572,631	-		PS417_07110	0.26	+1.5
1,572,631	-		PS417_07110	0.26	+1.0
1,572,631	-		PS417_07110	0.26	-0.6
1,572,689	+		PS417_07110	0.39	-0.3
1,573,001	+				-1.3
1,573,001	+				-0.3
1,573,103	+		PS417_07115	0.11	-0.6
1,573,103	+		PS417_07115	0.11	-1.0
1,573,103	+		PS417_07115	0.11	-2.2
1,573,104	-		PS417_07115	0.11	+0.5
1,573,104	-		PS417_07115	0.11	+0.7
1,573,107	+		PS417_07115	0.11	+0.3
1,573,107	+		PS417_07115	0.11	-1.9
1,573,113	-		PS417_07115	0.11	-1.5
1,573,196	+		PS417_07115	0.17	-1.9
1,573,197	-		PS417_07115	0.17	-0.3
1,573,197	-		PS417_07115	0.17	-1.9
1,573,230	+		PS417_07115	0.19	-1.5
1,573,230	+		PS417_07115	0.19	-3.7
1,573,433	+		PS417_07115	0.31	-2.8
1,573,433	+		PS417_07115	0.31	-1.3
1,573,433	+		PS417_07115	0.31	-0.4
1,573,434	-		PS417_07115	0.31	-1.3
1,573,800	-		PS417_07115	0.54	-1.1
1,573,906	-		PS417_07115	0.60	-1.4
1,573,907	+		PS417_07115	0.61	-0.1
1,573,908	-		PS417_07115	0.61	-1.0
1,573,908	-		PS417_07115	0.61	-1.8
1,573,908	-		PS417_07115	0.61	-0.9
1,573,914	-		PS417_07115	0.61	-0.9
1,573,914	-		PS417_07115	0.61	-1.1
1,573,962	-		PS417_07115	0.64	-1.7
1,573,997	+		PS417_07115	0.66	-1.8
1,573,997	+		PS417_07115	0.66	+0.3
1,574,320	+		PS417_07115	0.86	-2.1
1,574,626	-				-0.7
1,574,628	+				+0.4
1,574,628	+				-0.7
1,574,628	+				-0.3
1,574,628	+				-1.3
1,574,628	+				+1.5
1,574,628	+				-0.6
1,574,629	-				+0.5
1,574,629	-				+0.5
1,574,629	-				+0.8
1,574,631	+				-0.3
1,574,632	-				-1.5
1,574,632	-				+1.3
1,574,633	+				+2.3
1,574,633	+				+0.6
1,574,633	+				+1.1
1,574,633	+				+0.8
1,574,633	+				+0.2
1,574,634	-				+1.3
1,574,634	-				-0.4
1,574,634	-				-0.0
1,574,635	+				-0.6
1,574,635	+				+4.5
1,574,635	+				-1.7
1,574,635	+				+0.1
1,574,684	+				+0.9
1,574,684	+				+0.4
1,574,755	-				-1.1
1,574,863	+				+0.7
1,574,945	+				-1.5
1,574,991	-				-0.7
1,575,181	+		PS417_07120	0.30	-0.9
1,575,230	+		PS417_07120	0.38	+0.6
1,575,263	-		PS417_07120	0.44	-1.4
1,575,263	-		PS417_07120	0.44	-0.0
1,575,302	+		PS417_07120	0.51	-1.1
1,575,303	-		PS417_07120	0.51	-2.6
1,575,303	-		PS417_07120	0.51	-0.0
1,575,475	+		PS417_07120	0.80	-0.5
1,575,475	+		PS417_07120	0.80	-1.4