Strain Fitness in Pseudomonas simiae WCS417 around PS417_05715

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
1,281,914	-				-0.1
1,281,967	+				-1.1
1,281,968	-				-1.4
1,281,969	+				-1.1
1,281,969	+				-1.7
1,281,970	-				+2.2
1,281,980	-				+0.1
1,282,064	-		PS417_05705	0.10	-0.1
1,282,064	-		PS417_05705	0.10	+0.4
1,282,080	+		PS417_05705	0.15	-0.1
1,282,081	-		PS417_05705	0.15	-0.2
1,282,081	-		PS417_05705	0.15	-1.3
1,282,221	-		PS417_05705	0.56	-1.0
1,282,304	+		PS417_05705	0.80	-0.1
1,282,305	-		PS417_05705	0.80	+1.1
1,282,473	+		PS417_05710	0.15	-0.7
1,282,763	+		PS417_05710	0.72	+1.4
1,282,763	+		PS417_05710	0.72	-1.6
1,282,828	+		PS417_05710	0.84	+1.4
1,282,843	-		PS417_05710	0.87	-0.7
1,282,908	-				+0.2
1,282,929	+				-0.0
1,282,930	-				+2.2
1,282,930	-				+0.8
1,282,995	-		PS417_05715	0.13	+0.2
1,283,008	+		PS417_05715	0.16	+0.3
1,283,008	+		PS417_05715	0.16	-0.3
1,283,009	-		PS417_05715	0.16	-1.1
1,283,009	-		PS417_05715	0.16	+1.4
1,283,056	+		PS417_05715	0.23	+0.3
1,283,057	-		PS417_05715	0.24	+0.2
1,283,178	-		PS417_05715	0.43	+0.2
1,283,230	+		PS417_05715	0.52	+0.1
1,283,230	+		PS417_05715	0.52	+0.4
1,283,231	-		PS417_05715	0.52	+0.2
1,283,231	-		PS417_05715	0.52	+0.3
1,284,091	+		PS417_05725	0.23	-1.1
1,284,092	-		PS417_05725	0.23	-0.1
1,284,092	-		PS417_05725	0.23	-0.3
1,284,262	+				-0.2
1,284,262	+		PS417_05725	0.40	+0.5
1,284,262	+		PS417_05725	0.40	+0.2
1,284,263	-		PS417_05725	0.40	-0.3
1,284,263	-		PS417_05725	0.40	-2.0
1,284,385	+		PS417_05725	0.52	+0.4
1,284,386	-		PS417_05725	0.53	-0.7
1,284,386	-		PS417_05725	0.53	-2.1
1,284,386	-		PS417_05725	0.53	-0.4
1,284,386	-		PS417_05725	0.53	-0.7
1,284,407	-		PS417_05725	0.55	-0.5
1,284,492	+		PS417_05725	0.63	-0.6