Strain Fitness in Agrobacterium fabrum C58 around Atu6053

Experiment: Xylobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6052 and Atu6053 are separated by 96 nucleotidesAtu6053 and Atu6054 are separated by 28 nucleotidesAtu6054 and Atu6055 are separated by 323 nucleotides Atu6052: Atu6052 - conserved hypothetical protein, at 64,358 to 65,185 Atu6052 Atu6053: Atu6053 - conserved hypothetical protein, at 65,282 to 65,686 Atu6053 Atu6054: Atu6054 - conserved hypothetical protein, at 65,715 to 66,107 Atu6054 Atu6055: Atu6055 - transcriptional regulator, LysR family, at 66,431 to 67,327 Atu6055 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 64.317 kb on + strandat 64.399 kb on + strandat 64.412 kb on - strandat 64.422 kb on + strandat 64.422 kb on + strandat 64.430 kb on - strandat 64.430 kb on - strandat 64.432 kb on + strandat 64.449 kb on - strand, within Atu6052at 64.477 kb on - strand, within Atu6052at 64.480 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.493 kb on + strand, within Atu6052at 64.524 kb on + strand, within Atu6052at 64.563 kb on - strand, within Atu6052at 64.714 kb on + strand, within Atu6052at 64.722 kb on - strand, within Atu6052at 64.733 kb on + strand, within Atu6052at 64.741 kb on - strand, within Atu6052at 64.788 kb on + strand, within Atu6052at 64.798 kb on + strand, within Atu6052at 64.805 kb on + strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.905 kb on - strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 65.008 kb on + strand, within Atu6052at 65.013 kb on + strand, within Atu6052at 65.022 kb on - strand, within Atu6052at 65.041 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.085 kb on - strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.103 kb on - strandat 65.157 kb on + strandat 65.165 kb on - strandat 65.179 kb on + strandat 65.187 kb on - strandat 65.206 kb on + strandat 65.259 kb on - strandat 65.358 kb on + strand, within Atu6053at 65.376 kb on + strand, within Atu6053at 65.389 kb on - strand, within Atu6053at 65.413 kb on - strand, within Atu6053at 65.424 kb on + strand, within Atu6053at 65.430 kb on - strand, within Atu6053at 65.477 kb on - strand, within Atu6053at 65.498 kb on - strand, within Atu6053at 65.516 kb on - strand, within Atu6053at 65.518 kb on + strand, within Atu6053at 65.543 kb on + strand, within Atu6053at 65.608 kb on - strand, within Atu6053at 65.643 kb on - strand, within Atu6053at 65.697 kb on + strandat 65.704 kb on + strandat 65.705 kb on - strandat 65.836 kb on + strand, within Atu6054at 65.841 kb on + strand, within Atu6054at 65.882 kb on - strand, within Atu6054at 65.886 kb on + strand, within Atu6054at 65.887 kb on - strand, within Atu6054at 65.894 kb on - strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 66.096 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.118 kb on + strandat 66.124 kb on - strandat 66.124 kb on - strandat 66.138 kb on - strandat 66.148 kb on + strandat 66.171 kb on + strandat 66.171 kb on + strandat 66.179 kb on - strandat 66.227 kb on + strandat 66.351 kb on - strandat 66.401 kb on + strandat 66.452 kb on - strandat 66.452 kb on - strandat 66.475 kb on - strandat 66.483 kb on + strandat 66.552 kb on - strand, within Atu6055

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
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64,317 + +0.2
64,399 + -1.6
64,412 - +0.4
64,422 + +0.2
64,422 + +0.8
64,430 - -0.1
64,430 - +0.8
64,432 + -0.4
64,449 - Atu6052 0.11 +0.3
64,477 - Atu6052 0.14 -1.4
64,480 + Atu6052 0.15 +0.1
64,482 + Atu6052 0.15 +0.1
64,482 + Atu6052 0.15 +1.0
64,482 + Atu6052 0.15 +0.1
64,490 - Atu6052 0.16 -0.4
64,490 - Atu6052 0.16 +0.2
64,493 + Atu6052 0.16 +1.4
64,524 + Atu6052 0.20 +1.2
64,563 - Atu6052 0.25 -1.3
64,714 + Atu6052 0.43 +1.3
64,722 - Atu6052 0.44 -0.7
64,733 + Atu6052 0.45 -1.0
64,741 - Atu6052 0.46 -0.6
64,788 + Atu6052 0.52 -0.4
64,798 + Atu6052 0.53 +0.7
64,805 + Atu6052 0.54 +1.5
64,806 - Atu6052 0.54 +0.8
64,806 - Atu6052 0.54 +0.4
64,806 - Atu6052 0.54 +2.1
64,853 - Atu6052 0.60 +1.1
64,853 - Atu6052 0.60 -0.4
64,905 - Atu6052 0.66 +0.6
64,921 + Atu6052 0.68 +0.3
64,921 + Atu6052 0.68 +0.3
65,008 + Atu6052 0.79 +0.4
65,013 + Atu6052 0.79 -0.3
65,022 - Atu6052 0.80 +1.0
65,041 + Atu6052 0.82 -0.1
65,047 + Atu6052 0.83 +0.6
65,047 + Atu6052 0.83 -0.1
65,085 - Atu6052 0.88 -1.0
65,095 + Atu6052 0.89 +0.3
65,095 + Atu6052 0.89 +1.4
65,095 + Atu6052 0.89 +0.6
65,103 - +1.2
65,157 + +0.2
65,165 - +0.4
65,179 + -0.8
65,187 - -1.3
65,206 + -0.2
65,259 - +0.8
65,358 + Atu6053 0.19 +2.5
65,376 + Atu6053 0.23 +0.5
65,389 - Atu6053 0.26 -0.9
65,413 - Atu6053 0.32 +0.8
65,424 + Atu6053 0.35 -1.1
65,430 - Atu6053 0.37 +0.3
65,477 - Atu6053 0.48 +0.2
65,498 - Atu6053 0.53 +1.2
65,516 - Atu6053 0.58 +0.3
65,518 + Atu6053 0.58 +0.2
65,543 + Atu6053 0.64 -0.8
65,608 - Atu6053 0.80 +1.0
65,643 - Atu6053 0.89 +0.9
65,697 + +0.2
65,704 + +0.1
65,705 - +0.4
65,836 + Atu6054 0.31 +0.6
65,841 + Atu6054 0.32 +1.1
65,882 - Atu6054 0.42 +0.4
65,886 + Atu6054 0.44 +2.2
65,887 - Atu6054 0.44 -1.1
65,894 - Atu6054 0.46 +0.2
65,933 + Atu6054 0.55 +0.3
65,933 + Atu6054 0.55 -0.1
65,933 + Atu6054 0.55 +2.8
65,933 + Atu6054 0.55 +0.2
65,933 + Atu6054 0.55 -0.8
65,934 - Atu6054 0.56 +0.1
65,934 - Atu6054 0.56 -0.1
66,096 + +0.6
66,116 + +0.8
66,116 + +0.8
66,116 + +0.2
66,116 + +0.7
66,118 + +0.4
66,124 - +0.9
66,124 - -1.4
66,138 - +1.3
66,148 + +1.4
66,171 + +0.3
66,171 + +0.3
66,179 - +0.6
66,227 + -0.8
66,351 - -1.0
66,401 + +0.1
66,452 - +0.4
66,452 - +0.3
66,475 - +0.4
66,483 + +1.5
66,552 - Atu6055 0.13 -2.2

Or see this region's nucleotide sequence