Strain Fitness in Agrobacterium fabrum C58 around Atu5448

Experiment: Xylobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5447 and Atu5448 are separated by 235 nucleotidesAtu5448 and Atu5449 are separated by 300 nucleotidesAtu5449 and Atu5450 are separated by 62 nucleotides Atu5447: Atu5447 - zinc-binding oxidoreductase, at 440,268 to 441,272 Atu5447 Atu5448: Atu5448 - hypothetical protein, at 441,508 to 441,768 Atu5448 Atu5449: Atu5449 - heat-shock protein, at 442,069 to 442,545 Atu5449 Atu5450: Atu5450 - hypothetical protein, at 442,608 to 442,907 Atu5450 Position (kb) 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.587 kb on + strand, within Atu5447at 440.616 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.632 kb on - strand, within Atu5447at 440.635 kb on + strand, within Atu5447at 440.695 kb on + strand, within Atu5447at 440.791 kb on - strand, within Atu5447at 440.816 kb on + strand, within Atu5447at 440.824 kb on - strand, within Atu5447at 440.873 kb on + strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.949 kb on - strand, within Atu5447at 440.985 kb on + strand, within Atu5447at 440.988 kb on - strand, within Atu5447at 440.991 kb on + strand, within Atu5447at 441.086 kb on + strand, within Atu5447at 441.099 kb on - strand, within Atu5447at 441.109 kb on - strand, within Atu5447at 441.223 kb on - strandat 441.242 kb on + strandat 441.242 kb on + strandat 441.248 kb on + strandat 441.250 kb on - strandat 441.250 kb on - strandat 441.250 kb on - strandat 441.254 kb on + strandat 441.371 kb on - strandat 441.443 kb on + strandat 441.443 kb on + strandat 441.517 kb on - strandat 441.529 kb on - strandat 441.598 kb on - strand, within Atu5448at 441.598 kb on - strand, within Atu5448at 441.598 kb on - strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.608 kb on - strand, within Atu5448at 441.622 kb on - strand, within Atu5448at 441.749 kb on - strandat 441.841 kb on + strandat 441.847 kb on - strandat 441.847 kb on - strandat 441.868 kb on + strandat 441.876 kb on - strandat 441.944 kb on + strandat 441.952 kb on - strandat 441.994 kb on + strandat 441.994 kb on + strandat 442.002 kb on - strandat 442.034 kb on - strandat 442.046 kb on - strandat 442.059 kb on + strandat 442.059 kb on + strandat 442.059 kb on + strandat 442.073 kb on - strandat 442.078 kb on + strandat 442.080 kb on - strandat 442.093 kb on + strandat 442.191 kb on + strand, within Atu5449at 442.265 kb on - strand, within Atu5449at 442.279 kb on + strand, within Atu5449at 442.286 kb on - strand, within Atu5449at 442.323 kb on - strand, within Atu5449at 442.352 kb on + strand, within Atu5449at 442.391 kb on - strand, within Atu5449at 442.500 kb on + strandat 442.606 kb on - strandat 442.673 kb on - strand, within Atu5450at 442.686 kb on - strand, within Atu5450at 442.686 kb on - strand, within Atu5450at 442.749 kb on + strand, within Atu5450at 442.762 kb on + strand, within Atu5450at 442.762 kb on + strand, within Atu5450at 442.762 kb on + strand, within Atu5450at 442.767 kb on + strand, within Atu5450at 442.767 kb on + strand, within Atu5450

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
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440,515 - Atu5447 0.25 -0.2
440,515 - Atu5447 0.25 +0.4
440,515 - Atu5447 0.25 +0.4
440,587 + Atu5447 0.32 -0.8
440,616 - Atu5447 0.35 +0.3
440,628 - Atu5447 0.36 +1.1
440,628 - Atu5447 0.36 +1.3
440,632 - Atu5447 0.36 +0.1
440,635 + Atu5447 0.37 -1.0
440,695 + Atu5447 0.42 -0.4
440,791 - Atu5447 0.52 +0.7
440,816 + Atu5447 0.55 +0.4
440,824 - Atu5447 0.55 -0.2
440,873 + Atu5447 0.60 -0.9
440,898 - Atu5447 0.63 +0.0
440,898 - Atu5447 0.63 -0.1
440,949 - Atu5447 0.68 -1.0
440,985 + Atu5447 0.71 +0.6
440,988 - Atu5447 0.72 +0.8
440,991 + Atu5447 0.72 -0.2
441,086 + Atu5447 0.81 -0.8
441,099 - Atu5447 0.83 -1.8
441,109 - Atu5447 0.84 +1.7
441,223 - +1.5
441,242 + -0.3
441,242 + -0.8
441,248 + +0.4
441,250 - +0.7
441,250 - -0.2
441,250 - +1.2
441,254 + -0.1
441,371 - +0.4
441,443 + -0.9
441,443 + +0.8
441,517 - +1.1
441,529 - -1.3
441,598 - Atu5448 0.34 +0.3
441,598 - Atu5448 0.34 +0.5
441,598 - Atu5448 0.34 +0.9
441,600 + Atu5448 0.35 +0.4
441,600 + Atu5448 0.35 +0.5
441,600 + Atu5448 0.35 +0.3
441,600 + Atu5448 0.35 +0.7
441,608 - Atu5448 0.38 +0.3
441,622 - Atu5448 0.44 +0.1
441,749 - +0.5
441,841 + +0.3
441,847 - +0.3
441,847 - -0.3
441,868 + +0.0
441,876 - +0.4
441,944 + +1.1
441,952 - +0.3
441,994 + -0.3
441,994 + +2.0
442,002 - +0.8
442,034 - +1.2
442,046 - +0.6
442,059 + +1.4
442,059 + +0.0
442,059 + -1.1
442,073 - -0.0
442,078 + +0.9
442,080 - +1.7
442,093 + -0.4
442,191 + Atu5449 0.26 +0.7
442,265 - Atu5449 0.41 +2.4
442,279 + Atu5449 0.44 +0.0
442,286 - Atu5449 0.45 -1.5
442,323 - Atu5449 0.53 +1.2
442,352 + Atu5449 0.59 +0.1
442,391 - Atu5449 0.68 -0.2
442,500 + -0.0
442,606 - +0.4
442,673 - Atu5450 0.22 -1.8
442,686 - Atu5450 0.26 -0.7
442,686 - Atu5450 0.26 +0.3
442,749 + Atu5450 0.47 +0.6
442,762 + Atu5450 0.51 +0.7
442,762 + Atu5450 0.51 -0.0
442,762 + Atu5450 0.51 +0.2
442,767 + Atu5450 0.53 +0.2
442,767 + Atu5450 0.53 +0.2

Or see this region's nucleotide sequence