Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3431 and Atu3432 overlap by 4 nucleotides Atu3432 and Atu3433 are separated by 69 nucleotides
Atu3431: Atu3431 - acyl-CoA dehydrogenase, at 476,602 to 477,780
Atu3431
Atu3432: Atu3432 - desulfurizing enzyme, at 477,777 to 478,808
Atu3432
Atu3433: Atu3433 - oligopeptide ABC transporter substrate-binding protein, at 478,878 to 480,485
Atu3433
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1
2 at 476.813 kb on - strand, within Atu3431 at 476.839 kb on + strand, within Atu3431 at 476.895 kb on + strand, within Atu3431 at 476.903 kb on - strand, within Atu3431 at 476.919 kb on + strand, within Atu3431 at 476.924 kb on + strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.937 kb on + strand, within Atu3431 at 476.944 kb on + strand, within Atu3431 at 476.952 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.019 kb on + strand, within Atu3431 at 477.408 kb on - strand, within Atu3431 at 477.431 kb on + strand, within Atu3431 at 477.440 kb on - strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.499 kb on - strand, within Atu3431 at 477.511 kb on - strand, within Atu3431 at 477.583 kb on + strand, within Atu3431 at 477.599 kb on + strand, within Atu3431 at 477.736 kb on - strand at 477.751 kb on + strand at 477.920 kb on + strand, within Atu3432 at 478.085 kb on + strand, within Atu3432 at 478.191 kb on - strand, within Atu3432 at 478.246 kb on + strand, within Atu3432 at 478.279 kb on - strand, within Atu3432 at 478.352 kb on - strand, within Atu3432 at 478.373 kb on + strand, within Atu3432 at 478.381 kb on - strand, within Atu3432 at 478.463 kb on - strand, within Atu3432 at 478.517 kb on + strand, within Atu3432 at 478.555 kb on - strand, within Atu3432 at 478.660 kb on + strand, within Atu3432 at 478.717 kb on - strand at 478.734 kb on + strand at 478.764 kb on - strand at 478.796 kb on + strand at 478.806 kb on + strand at 478.818 kb on - strand at 478.968 kb on + strand at 479.055 kb on - strand, within Atu3433 at 479.077 kb on + strand, within Atu3433 at 479.085 kb on - strand, within Atu3433 at 479.106 kb on + strand, within Atu3433 at 479.111 kb on + strand, within Atu3433 at 479.293 kb on - strand, within Atu3433 at 479.316 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.475 kb on - strand, within Atu3433 at 479.593 kb on + strand, within Atu3433 at 479.694 kb on - strand, within Atu3433 at 479.713 kb on - strand, within Atu3433
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 476,813 - Atu3431 0.18 +0.5 476,839 + Atu3431 0.20 -0.2 476,895 + Atu3431 0.25 +1.3 476,903 - Atu3431 0.26 -0.7 476,919 + Atu3431 0.27 +0.4 476,924 + Atu3431 0.27 -0.4 476,927 - Atu3431 0.28 +0.3 476,927 - Atu3431 0.28 -0.5 476,937 + Atu3431 0.28 +0.2 476,944 + Atu3431 0.29 -0.1 476,952 + Atu3431 0.30 +0.7 476,997 + Atu3431 0.34 -0.2 476,997 + Atu3431 0.34 +0.1 477,005 - Atu3431 0.34 -0.0 477,005 - Atu3431 0.34 -0.1 477,019 + Atu3431 0.35 +0.3 477,408 - Atu3431 0.68 +0.2 477,431 + Atu3431 0.70 -0.1 477,440 - Atu3431 0.71 +0.4 477,491 + Atu3431 0.75 +0.5 477,491 + Atu3431 0.75 -0.3 477,499 - Atu3431 0.76 +0.5 477,511 - Atu3431 0.77 -0.7 477,583 + Atu3431 0.83 +0.1 477,599 + Atu3431 0.85 +0.3 477,736 - -0.2 477,751 + -0.0 477,920 + Atu3432 0.14 -0.3 478,085 + Atu3432 0.30 +1.3 478,191 - Atu3432 0.40 +0.8 478,246 + Atu3432 0.45 -0.2 478,279 - Atu3432 0.49 +0.2 478,352 - Atu3432 0.56 +0.4 478,373 + Atu3432 0.58 -0.5 478,381 - Atu3432 0.59 +1.1 478,463 - Atu3432 0.66 +0.1 478,517 + Atu3432 0.72 +2.1 478,555 - Atu3432 0.75 +0.3 478,660 + Atu3432 0.86 +0.8 478,717 - -0.5 478,734 + -0.5 478,764 - +2.1 478,796 + -0.2 478,806 + +0.2 478,818 - +0.8 478,968 + +0.1 479,055 - Atu3433 0.11 -0.4 479,077 + Atu3433 0.12 +0.7 479,085 - Atu3433 0.13 -0.1 479,106 + Atu3433 0.14 +0.3 479,111 + Atu3433 0.14 +0.4 479,293 - Atu3433 0.26 -0.8 479,316 + Atu3433 0.27 -0.1 479,321 + Atu3433 0.28 -0.6 479,321 + Atu3433 0.28 -0.6 479,435 + Atu3433 0.35 -0.1 479,435 + Atu3433 0.35 -0.0 479,475 - Atu3433 0.37 +0.4 479,593 + Atu3433 0.44 +0.8 479,694 - Atu3433 0.51 +0.4 479,713 - Atu3433 0.52 +0.2
Or see this region's nucleotide sequence