Strain Fitness in Escherichia coli BW25113 around b3718
Experiment: .5% DMSO
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | .5% DMSO |
---|---|---|---|---|---|
remove | |||||
3,895,724 | - | yieI | b3716 | 0.42 | +0.7 |
3,895,724 | - | yieI | b3716 | 0.42 | +0.6 |
3,895,724 | - | yieI | b3716 | 0.42 | -0.8 |
3,895,724 | - | yieI | b3716 | 0.42 | -0.6 |
3,895,724 | - | yieI | b3716 | 0.42 | +0.5 |
3,895,770 | + | yieI | b3716 | 0.51 | +0.2 |
3,895,781 | + | yieI | b3716 | 0.54 | +0.0 |
3,895,782 | - | yieI | b3716 | 0.54 | +0.4 |
3,895,782 | - | yieI | b3716 | 0.54 | +0.7 |
3,895,789 | - | yieI | b3716 | 0.56 | -0.5 |
3,895,839 | - | yieI | b3716 | 0.66 | +0.1 |
3,895,839 | - | yieI | b3716 | 0.66 | +4.0 |
3,895,839 | - | yieI | b3716 | 0.66 | +0.6 |
3,895,853 | + | yieI | b3716 | 0.69 | -0.4 |
3,895,858 | + | yieI | b3716 | 0.70 | +0.4 |
3,895,858 | + | yieI | b3716 | 0.70 | -1.2 |
3,895,928 | - | yieI | b3716 | 0.85 | -0.1 |
3,895,928 | - | yieI | b3716 | 0.85 | +1.1 |
3,895,933 | - | yieI | b3716 | 0.86 | -1.4 |
3,895,984 | + | -0.4 | |||
3,895,984 | + | -0.8 | |||
3,895,986 | + | -0.3 | |||
3,895,991 | + | -0.2 | |||
3,895,999 | + | +2.7 | |||
3,896,021 | + | -0.6 | |||
3,896,040 | - | +0.4 | |||
3,896,040 | - | +0.0 | |||
3,896,074 | + | +0.4 | |||
3,896,119 | + | cbrC | b3717 | 0.13 | -0.5 |
3,896,119 | + | cbrC | b3717 | 0.13 | -0.2 |
3,896,119 | + | cbrC | b3717 | 0.13 | -0.1 |
3,896,120 | + | cbrC | b3717 | 0.13 | -0.5 |
3,896,120 | + | cbrC | b3717 | 0.13 | -0.3 |
3,896,206 | + | cbrC | b3717 | 0.27 | -0.4 |
3,896,206 | + | cbrC | b3717 | 0.27 | +0.8 |
3,896,220 | - | cbrC | b3717 | 0.30 | -0.4 |
3,896,220 | - | cbrC | b3717 | 0.30 | -1.4 |
3,896,230 | + | cbrC | b3717 | 0.31 | +0.0 |
3,896,230 | - | cbrC | b3717 | 0.31 | +0.4 |
3,896,230 | - | cbrC | b3717 | 0.31 | -1.2 |
3,896,240 | - | cbrC | b3717 | 0.33 | +0.8 |
3,896,240 | - | cbrC | b3717 | 0.33 | -1.8 |
3,896,240 | - | cbrC | b3717 | 0.33 | +0.4 |
3,896,240 | - | cbrC | b3717 | 0.33 | +0.4 |
3,896,277 | + | cbrC | b3717 | 0.39 | +1.4 |
3,896,283 | - | cbrC | b3717 | 0.40 | +0.0 |
3,896,288 | + | cbrC | b3717 | 0.41 | +0.1 |
3,896,301 | + | cbrC | b3717 | 0.44 | -0.6 |
3,896,301 | + | cbrC | b3717 | 0.44 | +0.2 |
3,896,322 | + | cbrC | b3717 | 0.47 | +0.0 |
3,896,335 | + | cbrC | b3717 | 0.49 | -0.3 |
3,896,335 | + | cbrC | b3717 | 0.49 | +0.5 |
3,896,343 | - | cbrC | b3717 | 0.51 | -1.2 |
3,896,345 | + | cbrC | b3717 | 0.51 | -1.0 |
3,896,380 | + | cbrC | b3717 | 0.57 | +0.2 |
3,896,384 | - | cbrC | b3717 | 0.58 | +1.1 |
3,896,385 | + | cbrC | b3717 | 0.58 | -0.4 |
3,896,452 | + | cbrC | b3717 | 0.69 | -0.6 |
3,896,452 | + | cbrC | b3717 | 0.69 | +0.1 |
3,896,473 | - | cbrC | b3717 | 0.73 | -1.0 |
3,896,494 | + | cbrC | b3717 | 0.76 | -0.1 |
3,896,570 | - | cbrC | b3717 | 0.89 | -0.2 |
3,896,570 | - | cbrC | b3717 | 0.89 | +0.1 |
3,896,579 | + | +0.1 | |||
3,896,579 | + | -0.6 | |||
3,896,587 | - | +0.4 | |||
3,896,587 | - | +0.4 | |||
3,896,588 | + | +1.4 | |||
3,896,589 | + | +0.3 | |||
3,896,589 | + | -0.1 | |||
3,896,589 | + | -0.9 | |||
3,896,589 | + | +0.9 | |||
3,896,589 | + | +0.4 | |||
3,896,589 | + | -0.6 | |||
3,896,589 | + | +1.6 | |||
3,896,589 | + | -2.0 | |||
3,896,589 | + | +0.2 | |||
3,896,589 | + | +0.2 | |||
3,896,591 | + | -0.1 | |||
3,896,597 | - | +0.8 | |||
3,896,604 | + | -0.3 | |||
3,896,604 | + | -0.2 | |||
3,896,604 | + | +0.6 | |||
3,896,604 | + | -2.0 | |||
3,896,605 | + | +0.6 | |||
3,896,605 | + | +0.4 | |||
3,896,624 | + | +0.3 | |||
3,896,624 | + | +0.0 | |||
3,896,699 | - | -0.8 | |||
3,896,752 | - | -0.1 | |||
3,896,757 | - | -0.5 | |||
3,896,757 | - | -0.2 | |||
3,896,781 | - | yieK | b3718 | 0.12 | +1.7 |
3,896,786 | - | yieK | b3718 | 0.13 | -1.1 |
3,896,896 | - | yieK | b3718 | 0.28 | +0.9 |
3,896,896 | - | yieK | b3718 | 0.28 | +0.8 |
3,896,898 | + | yieK | b3718 | 0.28 | +0.4 |
3,896,906 | - | yieK | b3718 | 0.29 | +0.2 |
3,896,939 | + | yieK | b3718 | 0.34 | +0.4 |
3,896,967 | - | yieK | b3718 | 0.38 | -1.2 |
3,897,021 | + | yieK | b3718 | 0.45 | -0.4 |
3,897,092 | - | yieK | b3718 | 0.55 | -0.2 |
3,897,110 | - | yieK | b3718 | 0.58 | +3.0 |
3,897,174 | + | yieK | b3718 | 0.66 | +0.6 |
3,897,193 | + | yieK | b3718 | 0.69 | -0.6 |
3,897,247 | + | yieK | b3718 | 0.76 | +0.0 |
3,897,279 | - | yieK | b3718 | 0.81 | -0.1 |
3,897,279 | - | yieK | b3718 | 0.81 | +0.2 |
3,897,331 | - | yieK | b3718 | 0.88 | +2.2 |
3,897,345 | - | +0.0 | |||
3,897,466 | - | +0.9 | |||
3,897,467 | - | +0.2 | |||
3,897,467 | - | -0.4 | |||
3,897,499 | - | +0.1 | |||
3,897,566 | - | yieL | b3719 | 0.12 | +1.2 |
3,897,591 | + | yieL | b3719 | 0.14 | -0.8 |
3,897,598 | - | yieL | b3719 | 0.14 | -0.0 |
3,897,623 | + | yieL | b3719 | 0.16 | +0.4 |
3,897,660 | + | yieL | b3719 | 0.20 | -0.5 |
3,897,660 | + | yieL | b3719 | 0.20 | +0.4 |
3,897,667 | - | yieL | b3719 | 0.20 | +0.2 |
3,897,668 | + | yieL | b3719 | 0.20 | -1.9 |
3,897,803 | - | yieL | b3719 | 0.32 | -1.2 |
3,898,019 | + | yieL | b3719 | 0.50 | -1.0 |
3,898,019 | + | yieL | b3719 | 0.50 | -1.6 |
3,898,026 | - | yieL | b3719 | 0.51 | -1.2 |
3,898,046 | + | yieL | b3719 | 0.53 | -0.9 |
3,898,082 | + | yieL | b3719 | 0.56 | +0.4 |
3,898,121 | - | yieL | b3719 | 0.59 | +0.0 |
3,898,124 | + | yieL | b3719 | 0.59 | -1.0 |
3,898,278 | + | yieL | b3719 | 0.72 | +0.4 |
3,898,290 | - | yieL | b3719 | 0.73 | -0.2 |
3,898,328 | + | yieL | b3719 | 0.77 | -0.6 |
3,898,328 | + | yieL | b3719 | 0.77 | -0.1 |
3,898,330 | + | yieL | b3719 | 0.77 | -0.9 |
3,898,330 | + | yieL | b3719 | 0.77 | -0.6 |
3,898,333 | - | yieL | b3719 | 0.77 | +0.0 |
3,898,333 | - | yieL | b3719 | 0.77 | +1.4 |
3,898,335 | + | yieL | b3719 | 0.77 | -1.1 |
3,898,335 | + | yieL | b3719 | 0.77 | +0.4 |
3,898,335 | + | yieL | b3719 | 0.77 | +0.4 |
3,898,341 | + | yieL | b3719 | 0.78 | +0.8 |
3,898,341 | + | yieL | b3719 | 0.78 | -2.4 |
3,898,406 | + | yieL | b3719 | 0.83 | -0.1 |
3,898,408 | + | yieL | b3719 | 0.84 | -0.2 |
3,898,411 | + | yieL | b3719 | 0.84 | -0.8 |
3,898,414 | + | yieL | b3719 | 0.84 | +0.8 |
3,898,414 | + | yieL | b3719 | 0.84 | +0.4 |
Or see this region's nucleotide sequence