Strain Fitness in Escherichia coli BW25113 around b3718

Experiment: .5% DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyieI and cbrC are separated by 48 nucleotidescbrC and yieK are separated by 61 nucleotidesyieK and yieL are separated by 14 nucleotides b3716: yieI - predicted inner membrane protein (NCBI), at 3,895,529 to 3,895,996 yieI b3717: cbrC - hypothetical protein (NCBI), at 3,896,045 to 3,896,632 cbrC b3718: yieK - hypothetical protein (NCBI), at 3,896,694 to 3,897,416 yieK b3719: yieL - predicted xylanase (RefSeq), at 3,897,431 to 3,898,600 yieL Position (kb) 3896 3897 3898Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3895.724 kb on - strand, within yieIat 3895.724 kb on - strand, within yieIat 3895.724 kb on - strand, within yieIat 3895.724 kb on - strand, within yieIat 3895.724 kb on - strand, within yieIat 3895.770 kb on + strand, within yieIat 3895.781 kb on + strand, within yieIat 3895.782 kb on - strand, within yieIat 3895.782 kb on - strand, within yieIat 3895.789 kb on - strand, within yieIat 3895.839 kb on - strand, within yieIat 3895.839 kb on - strand, within yieIat 3895.839 kb on - strand, within yieIat 3895.853 kb on + strand, within yieIat 3895.858 kb on + strand, within yieIat 3895.858 kb on + strand, within yieIat 3895.928 kb on - strand, within yieIat 3895.928 kb on - strand, within yieIat 3895.933 kb on - strand, within yieIat 3895.984 kb on + strandat 3895.984 kb on + strandat 3895.986 kb on + strandat 3895.991 kb on + strandat 3895.999 kb on + strandat 3896.021 kb on + strandat 3896.040 kb on - strandat 3896.040 kb on - strandat 3896.074 kb on + strandat 3896.119 kb on + strand, within cbrCat 3896.119 kb on + strand, within cbrCat 3896.119 kb on + strand, within cbrCat 3896.120 kb on + strand, within cbrCat 3896.120 kb on + strand, within cbrCat 3896.206 kb on + strand, within cbrCat 3896.206 kb on + strand, within cbrCat 3896.220 kb on - strand, within cbrCat 3896.220 kb on - strand, within cbrCat 3896.230 kb on + strand, within cbrCat 3896.230 kb on - strand, within cbrCat 3896.230 kb on - strand, within cbrCat 3896.240 kb on - strand, within cbrCat 3896.240 kb on - strand, within cbrCat 3896.240 kb on - strand, within cbrCat 3896.240 kb on - strand, within cbrCat 3896.277 kb on + strand, within cbrCat 3896.283 kb on - strand, within cbrCat 3896.288 kb on + strand, within cbrCat 3896.301 kb on + strand, within cbrCat 3896.301 kb on + strand, within cbrCat 3896.322 kb on + strand, within cbrCat 3896.335 kb on + strand, within cbrCat 3896.335 kb on + strand, within cbrCat 3896.343 kb on - strand, within cbrCat 3896.345 kb on + strand, within cbrCat 3896.380 kb on + strand, within cbrCat 3896.384 kb on - strand, within cbrCat 3896.385 kb on + strand, within cbrCat 3896.452 kb on + strand, within cbrCat 3896.452 kb on + strand, within cbrCat 3896.473 kb on - strand, within cbrCat 3896.494 kb on + strand, within cbrCat 3896.570 kb on - strand, within cbrCat 3896.570 kb on - strand, within cbrCat 3896.579 kb on + strandat 3896.579 kb on + strandat 3896.587 kb on - strandat 3896.587 kb on - strandat 3896.588 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.589 kb on + strandat 3896.591 kb on + strandat 3896.597 kb on - strandat 3896.604 kb on + strandat 3896.604 kb on + strandat 3896.604 kb on + strandat 3896.604 kb on + strandat 3896.605 kb on + strandat 3896.605 kb on + strandat 3896.624 kb on + strandat 3896.624 kb on + strandat 3896.699 kb on - strandat 3896.752 kb on - strandat 3896.757 kb on - strandat 3896.757 kb on - strandat 3896.781 kb on - strand, within yieKat 3896.786 kb on - strand, within yieKat 3896.896 kb on - strand, within yieKat 3896.896 kb on - strand, within yieKat 3896.898 kb on + strand, within yieKat 3896.906 kb on - strand, within yieKat 3896.939 kb on + strand, within yieKat 3896.967 kb on - strand, within yieKat 3897.021 kb on + strand, within yieKat 3897.092 kb on - strand, within yieKat 3897.110 kb on - strand, within yieKat 3897.174 kb on + strand, within yieKat 3897.193 kb on + strand, within yieKat 3897.247 kb on + strand, within yieKat 3897.279 kb on - strand, within yieKat 3897.279 kb on - strand, within yieKat 3897.331 kb on - strand, within yieKat 3897.345 kb on - strandat 3897.466 kb on - strandat 3897.467 kb on - strandat 3897.467 kb on - strandat 3897.499 kb on - strandat 3897.566 kb on - strand, within yieLat 3897.591 kb on + strand, within yieLat 3897.598 kb on - strand, within yieLat 3897.623 kb on + strand, within yieLat 3897.660 kb on + strand, within yieLat 3897.660 kb on + strand, within yieLat 3897.667 kb on - strand, within yieLat 3897.668 kb on + strand, within yieLat 3897.803 kb on - strand, within yieLat 3898.019 kb on + strand, within yieLat 3898.019 kb on + strand, within yieLat 3898.026 kb on - strand, within yieLat 3898.046 kb on + strand, within yieLat 3898.082 kb on + strand, within yieLat 3898.121 kb on - strand, within yieLat 3898.124 kb on + strand, within yieLat 3898.278 kb on + strand, within yieLat 3898.290 kb on - strand, within yieLat 3898.328 kb on + strand, within yieLat 3898.328 kb on + strand, within yieLat 3898.330 kb on + strand, within yieLat 3898.330 kb on + strand, within yieLat 3898.333 kb on - strand, within yieLat 3898.333 kb on - strand, within yieLat 3898.335 kb on + strand, within yieLat 3898.335 kb on + strand, within yieLat 3898.335 kb on + strand, within yieLat 3898.341 kb on + strand, within yieLat 3898.341 kb on + strand, within yieLat 3898.406 kb on + strand, within yieLat 3898.408 kb on + strand, within yieLat 3898.411 kb on + strand, within yieLat 3898.414 kb on + strand, within yieLat 3898.414 kb on + strand, within yieL

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Per-strain Table

Position Strand Gene LocusTag Fraction .5% DMSO
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3,895,724 - yieI b3716 0.42 +0.7
3,895,724 - yieI b3716 0.42 +0.6
3,895,724 - yieI b3716 0.42 -0.8
3,895,724 - yieI b3716 0.42 -0.6
3,895,724 - yieI b3716 0.42 +0.5
3,895,770 + yieI b3716 0.51 +0.2
3,895,781 + yieI b3716 0.54 +0.0
3,895,782 - yieI b3716 0.54 +0.4
3,895,782 - yieI b3716 0.54 +0.7
3,895,789 - yieI b3716 0.56 -0.5
3,895,839 - yieI b3716 0.66 +0.1
3,895,839 - yieI b3716 0.66 +4.0
3,895,839 - yieI b3716 0.66 +0.6
3,895,853 + yieI b3716 0.69 -0.4
3,895,858 + yieI b3716 0.70 +0.4
3,895,858 + yieI b3716 0.70 -1.2
3,895,928 - yieI b3716 0.85 -0.1
3,895,928 - yieI b3716 0.85 +1.1
3,895,933 - yieI b3716 0.86 -1.4
3,895,984 + -0.4
3,895,984 + -0.8
3,895,986 + -0.3
3,895,991 + -0.2
3,895,999 + +2.7
3,896,021 + -0.6
3,896,040 - +0.4
3,896,040 - +0.0
3,896,074 + +0.4
3,896,119 + cbrC b3717 0.13 -0.5
3,896,119 + cbrC b3717 0.13 -0.2
3,896,119 + cbrC b3717 0.13 -0.1
3,896,120 + cbrC b3717 0.13 -0.5
3,896,120 + cbrC b3717 0.13 -0.3
3,896,206 + cbrC b3717 0.27 -0.4
3,896,206 + cbrC b3717 0.27 +0.8
3,896,220 - cbrC b3717 0.30 -0.4
3,896,220 - cbrC b3717 0.30 -1.4
3,896,230 + cbrC b3717 0.31 +0.0
3,896,230 - cbrC b3717 0.31 +0.4
3,896,230 - cbrC b3717 0.31 -1.2
3,896,240 - cbrC b3717 0.33 +0.8
3,896,240 - cbrC b3717 0.33 -1.8
3,896,240 - cbrC b3717 0.33 +0.4
3,896,240 - cbrC b3717 0.33 +0.4
3,896,277 + cbrC b3717 0.39 +1.4
3,896,283 - cbrC b3717 0.40 +0.0
3,896,288 + cbrC b3717 0.41 +0.1
3,896,301 + cbrC b3717 0.44 -0.6
3,896,301 + cbrC b3717 0.44 +0.2
3,896,322 + cbrC b3717 0.47 +0.0
3,896,335 + cbrC b3717 0.49 -0.3
3,896,335 + cbrC b3717 0.49 +0.5
3,896,343 - cbrC b3717 0.51 -1.2
3,896,345 + cbrC b3717 0.51 -1.0
3,896,380 + cbrC b3717 0.57 +0.2
3,896,384 - cbrC b3717 0.58 +1.1
3,896,385 + cbrC b3717 0.58 -0.4
3,896,452 + cbrC b3717 0.69 -0.6
3,896,452 + cbrC b3717 0.69 +0.1
3,896,473 - cbrC b3717 0.73 -1.0
3,896,494 + cbrC b3717 0.76 -0.1
3,896,570 - cbrC b3717 0.89 -0.2
3,896,570 - cbrC b3717 0.89 +0.1
3,896,579 + +0.1
3,896,579 + -0.6
3,896,587 - +0.4
3,896,587 - +0.4
3,896,588 + +1.4
3,896,589 + +0.3
3,896,589 + -0.1
3,896,589 + -0.9
3,896,589 + +0.9
3,896,589 + +0.4
3,896,589 + -0.6
3,896,589 + +1.6
3,896,589 + -2.0
3,896,589 + +0.2
3,896,589 + +0.2
3,896,591 + -0.1
3,896,597 - +0.8
3,896,604 + -0.3
3,896,604 + -0.2
3,896,604 + +0.6
3,896,604 + -2.0
3,896,605 + +0.6
3,896,605 + +0.4
3,896,624 + +0.3
3,896,624 + +0.0
3,896,699 - -0.8
3,896,752 - -0.1
3,896,757 - -0.5
3,896,757 - -0.2
3,896,781 - yieK b3718 0.12 +1.7
3,896,786 - yieK b3718 0.13 -1.1
3,896,896 - yieK b3718 0.28 +0.9
3,896,896 - yieK b3718 0.28 +0.8
3,896,898 + yieK b3718 0.28 +0.4
3,896,906 - yieK b3718 0.29 +0.2
3,896,939 + yieK b3718 0.34 +0.4
3,896,967 - yieK b3718 0.38 -1.2
3,897,021 + yieK b3718 0.45 -0.4
3,897,092 - yieK b3718 0.55 -0.2
3,897,110 - yieK b3718 0.58 +3.0
3,897,174 + yieK b3718 0.66 +0.6
3,897,193 + yieK b3718 0.69 -0.6
3,897,247 + yieK b3718 0.76 +0.0
3,897,279 - yieK b3718 0.81 -0.1
3,897,279 - yieK b3718 0.81 +0.2
3,897,331 - yieK b3718 0.88 +2.2
3,897,345 - +0.0
3,897,466 - +0.9
3,897,467 - +0.2
3,897,467 - -0.4
3,897,499 - +0.1
3,897,566 - yieL b3719 0.12 +1.2
3,897,591 + yieL b3719 0.14 -0.8
3,897,598 - yieL b3719 0.14 -0.0
3,897,623 + yieL b3719 0.16 +0.4
3,897,660 + yieL b3719 0.20 -0.5
3,897,660 + yieL b3719 0.20 +0.4
3,897,667 - yieL b3719 0.20 +0.2
3,897,668 + yieL b3719 0.20 -1.9
3,897,803 - yieL b3719 0.32 -1.2
3,898,019 + yieL b3719 0.50 -1.0
3,898,019 + yieL b3719 0.50 -1.6
3,898,026 - yieL b3719 0.51 -1.2
3,898,046 + yieL b3719 0.53 -0.9
3,898,082 + yieL b3719 0.56 +0.4
3,898,121 - yieL b3719 0.59 +0.0
3,898,124 + yieL b3719 0.59 -1.0
3,898,278 + yieL b3719 0.72 +0.4
3,898,290 - yieL b3719 0.73 -0.2
3,898,328 + yieL b3719 0.77 -0.6
3,898,328 + yieL b3719 0.77 -0.1
3,898,330 + yieL b3719 0.77 -0.9
3,898,330 + yieL b3719 0.77 -0.6
3,898,333 - yieL b3719 0.77 +0.0
3,898,333 - yieL b3719 0.77 +1.4
3,898,335 + yieL b3719 0.77 -1.1
3,898,335 + yieL b3719 0.77 +0.4
3,898,335 + yieL b3719 0.77 +0.4
3,898,341 + yieL b3719 0.78 +0.8
3,898,341 + yieL b3719 0.78 -2.4
3,898,406 + yieL b3719 0.83 -0.1
3,898,408 + yieL b3719 0.84 -0.2
3,898,411 + yieL b3719 0.84 -0.8
3,898,414 + yieL b3719 0.84 +0.8
3,898,414 + yieL b3719 0.84 +0.4

Or see this region's nucleotide sequence