Strain Fitness in Escherichia coli BW25113 around b3882

Experiment: .5% DMSO

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyihS and yihT are separated by 16 nucleotidesyihT and yihU are separated by 23 nucleotidesyihU and yihV are separated by 167 nucleotides b3880: yihS - orf, hypothetical protein (VIMSS), at 4,068,538 to 4,069,779 yihS b3881: yihT - predicted aldolase (NCBI), at 4,069,796 to 4,070,674 yihT b3882: yihU - predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI), at 4,070,698 to 4,071,594 yihU b3883: yihV - putative kinase (VIMSS), at 4,071,762 to 4,072,658 yihV Position (kb) 4070 4071 4072Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4069.912 kb on + strand, within yihTat 4069.912 kb on + strand, within yihTat 4070.016 kb on + strand, within yihTat 4070.016 kb on + strand, within yihTat 4070.068 kb on + strand, within yihTat 4070.081 kb on - strand, within yihTat 4070.112 kb on - strand, within yihTat 4070.115 kb on + strand, within yihTat 4070.205 kb on + strand, within yihTat 4070.205 kb on + strand, within yihTat 4070.217 kb on - strand, within yihTat 4070.225 kb on - strand, within yihTat 4070.225 kb on - strand, within yihTat 4070.231 kb on + strand, within yihTat 4070.231 kb on - strand, within yihTat 4070.296 kb on - strand, within yihTat 4070.296 kb on - strand, within yihTat 4070.333 kb on - strand, within yihTat 4070.341 kb on - strand, within yihTat 4070.376 kb on + strand, within yihTat 4070.385 kb on - strand, within yihTat 4070.385 kb on - strand, within yihTat 4070.385 kb on - strand, within yihTat 4070.510 kb on + strand, within yihTat 4070.510 kb on + strand, within yihTat 4070.510 kb on - strand, within yihTat 4070.591 kb on + strandat 4070.591 kb on + strandat 4070.598 kb on + strandat 4070.598 kb on + strandat 4070.658 kb on + strandat 4070.658 kb on + strandat 4070.661 kb on + strandat 4070.666 kb on - strandat 4070.678 kb on + strandat 4070.684 kb on + strandat 4070.684 kb on + strandat 4070.721 kb on + strandat 4070.732 kb on + strandat 4070.732 kb on + strandat 4070.740 kb on - strandat 4070.740 kb on - strandat 4070.740 kb on - strandat 4070.742 kb on + strandat 4070.742 kb on + strandat 4070.742 kb on + strandat 4070.756 kb on + strandat 4070.759 kb on - strandat 4070.761 kb on + strandat 4070.769 kb on - strandat 4070.888 kb on - strand, within yihUat 4070.925 kb on - strand, within yihUat 4070.925 kb on - strand, within yihUat 4070.946 kb on - strand, within yihUat 4070.977 kb on + strand, within yihUat 4071.052 kb on - strand, within yihUat 4071.068 kb on - strand, within yihUat 4071.079 kb on - strand, within yihUat 4071.124 kb on + strand, within yihUat 4071.140 kb on + strand, within yihUat 4071.149 kb on + strand, within yihUat 4071.149 kb on + strand, within yihUat 4071.176 kb on - strand, within yihUat 4071.189 kb on + strand, within yihUat 4071.189 kb on + strand, within yihUat 4071.221 kb on + strand, within yihUat 4071.240 kb on - strand, within yihUat 4071.290 kb on + strand, within yihUat 4071.290 kb on + strand, within yihUat 4071.300 kb on + strand, within yihUat 4071.465 kb on - strand, within yihUat 4071.478 kb on + strand, within yihUat 4071.478 kb on + strand, within yihUat 4071.524 kb on - strandat 4071.524 kb on - strandat 4071.729 kb on - strandat 4071.783 kb on + strandat 4071.806 kb on + strandat 4071.806 kb on + strandat 4071.819 kb on - strandat 4071.819 kb on - strandat 4071.827 kb on + strandat 4071.827 kb on + strandat 4072.017 kb on + strand, within yihVat 4072.051 kb on + strand, within yihVat 4072.058 kb on + strand, within yihVat 4072.090 kb on + strand, within yihVat 4072.090 kb on + strand, within yihVat 4072.148 kb on + strand, within yihVat 4072.158 kb on + strand, within yihVat 4072.158 kb on + strand, within yihVat 4072.171 kb on - strand, within yihVat 4072.171 kb on - strand, within yihVat 4072.286 kb on - strand, within yihVat 4072.343 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.395 kb on + strand, within yihVat 4072.403 kb on - strand, within yihVat 4072.403 kb on - strand, within yihVat 4072.475 kb on - strand, within yihVat 4072.475 kb on - strand, within yihVat 4072.477 kb on + strand, within yihVat 4072.533 kb on - strand, within yihVat 4072.592 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction .5% DMSO
remove
4,069,912 + yihT b3881 0.13 -1.3
4,069,912 + yihT b3881 0.13 -1.7
4,070,016 + yihT b3881 0.25 +0.6
4,070,016 + yihT b3881 0.25 -1.4
4,070,068 + yihT b3881 0.31 -0.0
4,070,081 - yihT b3881 0.32 +0.3
4,070,112 - yihT b3881 0.36 +0.1
4,070,115 + yihT b3881 0.36 -1.3
4,070,205 + yihT b3881 0.47 +0.3
4,070,205 + yihT b3881 0.47 +0.6
4,070,217 - yihT b3881 0.48 -0.0
4,070,225 - yihT b3881 0.49 -0.2
4,070,225 - yihT b3881 0.49 +0.5
4,070,231 + yihT b3881 0.49 +0.3
4,070,231 - yihT b3881 0.49 +2.2
4,070,296 - yihT b3881 0.57 +0.8
4,070,296 - yihT b3881 0.57 -0.0
4,070,333 - yihT b3881 0.61 -0.7
4,070,341 - yihT b3881 0.62 -0.4
4,070,376 + yihT b3881 0.66 -0.1
4,070,385 - yihT b3881 0.67 +1.3
4,070,385 - yihT b3881 0.67 -0.9
4,070,385 - yihT b3881 0.67 -1.7
4,070,510 + yihT b3881 0.81 +0.9
4,070,510 + yihT b3881 0.81 -1.7
4,070,510 - yihT b3881 0.81 +2.1
4,070,591 + -0.1
4,070,591 + +0.2
4,070,598 + -0.1
4,070,598 + -2.5
4,070,658 + +1.3
4,070,658 + -0.5
4,070,661 + +0.2
4,070,666 - -0.8
4,070,678 + -0.9
4,070,684 + -0.5
4,070,684 + -1.9
4,070,721 + -0.7
4,070,732 + -0.1
4,070,732 + +1.3
4,070,740 - -0.3
4,070,740 - -0.3
4,070,740 - +0.1
4,070,742 + +2.8
4,070,742 + +0.3
4,070,742 + +2.2
4,070,756 + +0.3
4,070,759 - -1.5
4,070,761 + +0.1
4,070,769 - +0.5
4,070,888 - yihU b3882 0.21 -2.3
4,070,925 - yihU b3882 0.25 -0.4
4,070,925 - yihU b3882 0.25 -1.3
4,070,946 - yihU b3882 0.28 +0.3
4,070,977 + yihU b3882 0.31 +1.1
4,071,052 - yihU b3882 0.39 -0.7
4,071,068 - yihU b3882 0.41 +0.7
4,071,079 - yihU b3882 0.42 +0.7
4,071,124 + yihU b3882 0.47 -0.2
4,071,140 + yihU b3882 0.49 -0.6
4,071,149 + yihU b3882 0.50 -0.1
4,071,149 + yihU b3882 0.50 +0.6
4,071,176 - yihU b3882 0.53 -0.2
4,071,189 + yihU b3882 0.55 -0.7
4,071,189 + yihU b3882 0.55 -0.4
4,071,221 + yihU b3882 0.58 -0.3
4,071,240 - yihU b3882 0.60 -0.2
4,071,290 + yihU b3882 0.66 +4.2
4,071,290 + yihU b3882 0.66 +4.0
4,071,300 + yihU b3882 0.67 +0.8
4,071,465 - yihU b3882 0.86 -0.5
4,071,478 + yihU b3882 0.87 +0.3
4,071,478 + yihU b3882 0.87 -1.7
4,071,524 - -0.5
4,071,524 - +0.6
4,071,729 - +0.3
4,071,783 + -1.2
4,071,806 + -0.2
4,071,806 + +0.7
4,071,819 - +0.3
4,071,819 - -0.3
4,071,827 + +0.1
4,071,827 + -2.0
4,072,017 + yihV b3883 0.28 -0.3
4,072,051 + yihV b3883 0.32 +1.0
4,072,058 + yihV b3883 0.33 +0.1
4,072,090 + yihV b3883 0.37 -0.0
4,072,090 + yihV b3883 0.37 -0.3
4,072,148 + yihV b3883 0.43 -0.3
4,072,158 + yihV b3883 0.44 -0.9
4,072,158 + yihV b3883 0.44 +0.3
4,072,171 - yihV b3883 0.46 -0.9
4,072,171 - yihV b3883 0.46 +1.0
4,072,286 - yihV b3883 0.58 -0.8
4,072,343 + yihV b3883 0.65 +0.4
4,072,395 + yihV b3883 0.71 -0.9
4,072,395 + yihV b3883 0.71 -0.0
4,072,395 + yihV b3883 0.71 -0.8
4,072,403 - yihV b3883 0.71 -0.3
4,072,403 - yihV b3883 0.71 -0.2
4,072,475 - yihV b3883 0.79 -0.8
4,072,475 - yihV b3883 0.79 +1.1
4,072,477 + yihV b3883 0.80 +0.3
4,072,533 - yihV b3883 0.86 +0.2
4,072,592 + -0.1

Or see this region's nucleotide sequence