Strain Fitness in Escherichia coli BW25113 around b1796

Experiment: .5% DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaP and yoaK are separated by 32 nucleotidesyoaK and yoaJ are separated by 2 nucleotidesyoaJ and yeaQ are separated by 58 nucleotidesyeaQ and yoaG are separated by 147 nucleotidesyoaG and yeaR are separated by 3 nucleotidesyeaR and yeaS are separated by 172 nucleotides b1794: yeaP - orf, hypothetical protein (VIMSS), at 1,875,739 to 1,876,764 yeaP b4676: yoaK - expressed protein (RefSeq), at 1,876,797 to 1,876,895 yoaK b4675: yoaJ - expressed protein (RefSeq), at 1,876,898 to 1,876,972 yoaJ b1795: yeaQ - conserved inner membrane protein (NCBI), at 1,877,031 to 1,877,279 yeaQ b1796: yoaG - hypothetical protein (NCBI), at 1,877,427 to 1,877,609 yoaG b1797: yeaR - hypothetical protein (NCBI), at 1,877,613 to 1,877,972 yeaR b1798: yeaS - neutral amino-acid efflux system (NCBI), at 1,878,145 to 1,878,783 yeaS Position (kb) 1877 1878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1876.452 kb on + strand, within yeaPat 1876.480 kb on + strand, within yeaPat 1876.506 kb on + strand, within yeaPat 1876.616 kb on + strand, within yeaPat 1876.639 kb on + strand, within yeaPat 1876.639 kb on + strand, within yeaPat 1876.668 kb on + strandat 1876.678 kb on - strandat 1876.707 kb on + strandat 1876.753 kb on + strandat 1876.753 kb on + strandat 1876.753 kb on + strandat 1876.770 kb on + strandat 1876.879 kb on - strand, within yoaKat 1876.879 kb on - strand, within yoaKat 1876.889 kb on - strandat 1876.889 kb on - strandat 1876.945 kb on + strand, within yoaJat 1876.945 kb on + strand, within yoaJat 1876.955 kb on + strand, within yoaJat 1876.963 kb on - strand, within yoaJat 1876.963 kb on - strand, within yoaJat 1877.005 kb on + strandat 1877.014 kb on - strandat 1877.035 kb on + strandat 1877.135 kb on - strand, within yeaQat 1877.137 kb on + strand, within yeaQat 1877.145 kb on - strand, within yeaQat 1877.145 kb on - strand, within yeaQat 1877.174 kb on - strand, within yeaQat 1877.175 kb on - strand, within yeaQat 1877.260 kb on + strandat 1877.433 kb on + strandat 1877.476 kb on + strand, within yoaGat 1877.476 kb on + strand, within yoaGat 1877.484 kb on - strand, within yoaGat 1877.513 kb on - strand, within yoaGat 1877.571 kb on - strand, within yoaGat 1877.602 kb on - strandat 1877.658 kb on - strand, within yeaRat 1877.663 kb on + strand, within yeaRat 1877.663 kb on + strand, within yeaRat 1877.714 kb on + strand, within yeaRat 1877.715 kb on - strand, within yeaRat 1877.764 kb on + strand, within yeaRat 1877.765 kb on + strand, within yeaRat 1877.765 kb on + strand, within yeaRat 1877.791 kb on + strand, within yeaRat 1877.804 kb on - strand, within yeaRat 1877.804 kb on - strand, within yeaRat 1877.804 kb on - strand, within yeaRat 1877.814 kb on - strand, within yeaRat 1877.859 kb on - strand, within yeaRat 1877.985 kb on + strandat 1878.018 kb on - strandat 1878.085 kb on - strandat 1878.142 kb on - strandat 1878.142 kb on - strandat 1878.186 kb on + strandat 1878.236 kb on + strand, within yeaSat 1878.236 kb on + strand, within yeaSat 1878.236 kb on + strand, within yeaSat 1878.236 kb on + strand, within yeaSat 1878.244 kb on - strand, within yeaSat 1878.244 kb on - strand, within yeaSat 1878.244 kb on - strand, within yeaSat 1878.244 kb on - strand, within yeaSat 1878.303 kb on - strand, within yeaSat 1878.340 kb on + strand, within yeaSat 1878.363 kb on + strand, within yeaSat 1878.363 kb on + strand, within yeaSat 1878.364 kb on - strand, within yeaSat 1878.388 kb on - strand, within yeaSat 1878.414 kb on - strand, within yeaSat 1878.446 kb on + strand, within yeaSat 1878.454 kb on - strand, within yeaSat 1878.484 kb on + strand, within yeaSat 1878.484 kb on + strand, within yeaSat 1878.492 kb on - strand, within yeaSat 1878.492 kb on - strand, within yeaSat 1878.492 kb on - strand, within yeaSat 1878.511 kb on + strand, within yeaSat 1878.598 kb on - strand, within yeaSat 1878.598 kb on - strand, within yeaSat 1878.598 kb on - strand, within yeaSat 1878.598 kb on - strand, within yeaSat 1878.608 kb on - strand, within yeaS

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Per-strain Table

Position Strand Gene LocusTag Fraction .5% DMSO
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1,876,452 + yeaP b1794 0.69 +1.4
1,876,480 + yeaP b1794 0.72 -1.2
1,876,506 + yeaP b1794 0.75 +0.7
1,876,616 + yeaP b1794 0.85 +0.0
1,876,639 + yeaP b1794 0.88 -1.2
1,876,639 + yeaP b1794 0.88 -0.9
1,876,668 + -1.1
1,876,678 - -0.5
1,876,707 + -2.8
1,876,753 + +0.1
1,876,753 + +0.7
1,876,753 + +0.0
1,876,770 + -0.7
1,876,879 - yoaK b4676 0.83 -0.5
1,876,879 - yoaK b4676 0.83 -0.5
1,876,889 - -2.1
1,876,889 - -0.5
1,876,945 + yoaJ b4675 0.63 -0.2
1,876,945 + yoaJ b4675 0.63 +0.2
1,876,955 + yoaJ b4675 0.76 -1.1
1,876,963 - yoaJ b4675 0.87 -0.5
1,876,963 - yoaJ b4675 0.87 -0.5
1,877,005 + -0.5
1,877,014 - -1.5
1,877,035 + -1.5
1,877,135 - yeaQ b1795 0.42 +0.7
1,877,137 + yeaQ b1795 0.43 +0.5
1,877,145 - yeaQ b1795 0.46 -0.9
1,877,145 - yeaQ b1795 0.46 +0.2
1,877,174 - yeaQ b1795 0.57 -0.3
1,877,175 - yeaQ b1795 0.58 +1.3
1,877,260 + +0.1
1,877,433 + -1.5
1,877,476 + yoaG b1796 0.27 +0.9
1,877,476 + yoaG b1796 0.27 -0.0
1,877,484 - yoaG b1796 0.31 +0.7
1,877,513 - yoaG b1796 0.47 -0.2
1,877,571 - yoaG b1796 0.79 +0.9
1,877,602 - -1.8
1,877,658 - yeaR b1797 0.12 +0.5
1,877,663 + yeaR b1797 0.14 -1.5
1,877,663 + yeaR b1797 0.14 -0.5
1,877,714 + yeaR b1797 0.28 +0.3
1,877,715 - yeaR b1797 0.28 -0.2
1,877,764 + yeaR b1797 0.42 -0.0
1,877,765 + yeaR b1797 0.42 -0.8
1,877,765 + yeaR b1797 0.42 -0.0
1,877,791 + yeaR b1797 0.49 +0.4
1,877,804 - yeaR b1797 0.53 -0.5
1,877,804 - yeaR b1797 0.53 -2.0
1,877,804 - yeaR b1797 0.53 -0.1
1,877,814 - yeaR b1797 0.56 -0.5
1,877,859 - yeaR b1797 0.68 -0.0
1,877,985 + +0.1
1,878,018 - -1.0
1,878,085 - -0.5
1,878,142 - -0.1
1,878,142 - +0.8
1,878,186 + -0.5
1,878,236 + yeaS b1798 0.14 -1.5
1,878,236 + yeaS b1798 0.14 -0.5
1,878,236 + yeaS b1798 0.14 -0.5
1,878,236 + yeaS b1798 0.14 -0.5
1,878,244 - yeaS b1798 0.15 +1.1
1,878,244 - yeaS b1798 0.15 +0.0
1,878,244 - yeaS b1798 0.15 -0.5
1,878,244 - yeaS b1798 0.15 +0.5
1,878,303 - yeaS b1798 0.25 +1.3
1,878,340 + yeaS b1798 0.31 -0.5
1,878,363 + yeaS b1798 0.34 -2.5
1,878,363 + yeaS b1798 0.34 -2.0
1,878,364 - yeaS b1798 0.34 +0.1
1,878,388 - yeaS b1798 0.38 -0.5
1,878,414 - yeaS b1798 0.42 -0.5
1,878,446 + yeaS b1798 0.47 -0.5
1,878,454 - yeaS b1798 0.48 +2.1
1,878,484 + yeaS b1798 0.53 -0.5
1,878,484 + yeaS b1798 0.53 -0.5
1,878,492 - yeaS b1798 0.54 -2.0
1,878,492 - yeaS b1798 0.54 +0.5
1,878,492 - yeaS b1798 0.54 +1.1
1,878,511 + yeaS b1798 0.57 -0.5
1,878,598 - yeaS b1798 0.71 -0.7
1,878,598 - yeaS b1798 0.71 +0.2
1,878,598 - yeaS b1798 0.71 -1.5
1,878,598 - yeaS b1798 0.71 -1.5
1,878,608 - yeaS b1798 0.72 -1.5

Or see this region's nucleotide sequence