Strain Fitness in Escherichia coli BW25113 around b1055

Experiment: .5% DMSO

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxL and yceA are separated by 224 nucleotidesyceA and yceI are separated by 41 nucleotidesyceI and yceJ are separated by 3 nucleotides b1054: lpxL - lipid A biosynthesis lauroyl acyltransferase (NCBI), at 1,114,885 to 1,115,805 lpxL b1055: yceA - hypothetical protein (NCBI), at 1,116,030 to 1,117,082 yceA b1056: yceI - hypothetical protein (NCBI), at 1,117,124 to 1,117,699 yceI b1057: yceJ - predicted cytochrome b561 (NCBI), at 1,117,703 to 1,118,269 yceJ Position (kb) 1116 1117 1118Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1115.794 kb on - strandat 1115.794 kb on - strandat 1115.881 kb on + strandat 1115.889 kb on - strandat 1115.889 kb on - strandat 1115.976 kb on + strandat 1116.020 kb on + strandat 1116.021 kb on + strandat 1116.028 kb on - strandat 1116.028 kb on - strandat 1116.028 kb on - strandat 1116.036 kb on + strandat 1116.158 kb on + strand, within yceAat 1116.193 kb on - strand, within yceAat 1116.193 kb on - strand, within yceAat 1116.243 kb on + strand, within yceAat 1116.275 kb on + strand, within yceAat 1116.297 kb on - strand, within yceAat 1116.302 kb on - strand, within yceAat 1116.580 kb on - strand, within yceAat 1116.844 kb on - strand, within yceAat 1116.848 kb on + strand, within yceAat 1116.848 kb on + strand, within yceAat 1116.912 kb on - strand, within yceAat 1116.928 kb on - strand, within yceAat 1116.930 kb on + strand, within yceAat 1116.973 kb on + strand, within yceAat 1116.975 kb on + strand, within yceAat 1116.981 kb on + strandat 1116.981 kb on + strandat 1116.983 kb on - strandat 1116.989 kb on - strandat 1116.989 kb on - strandat 1117.048 kb on + strandat 1117.048 kb on + strandat 1117.054 kb on - strandat 1117.058 kb on + strandat 1117.058 kb on + strandat 1117.174 kb on + strandat 1117.199 kb on - strand, within yceIat 1117.208 kb on - strand, within yceIat 1117.240 kb on + strand, within yceIat 1117.240 kb on - strand, within yceIat 1117.247 kb on + strand, within yceIat 1117.252 kb on - strand, within yceIat 1117.252 kb on - strand, within yceIat 1117.254 kb on + strand, within yceIat 1117.254 kb on + strand, within yceIat 1117.254 kb on - strand, within yceIat 1117.254 kb on - strand, within yceIat 1117.254 kb on - strand, within yceIat 1117.262 kb on + strand, within yceIat 1117.262 kb on + strand, within yceIat 1117.306 kb on + strand, within yceIat 1117.306 kb on + strand, within yceIat 1117.307 kb on + strand, within yceIat 1117.422 kb on - strand, within yceIat 1117.422 kb on - strand, within yceIat 1117.454 kb on + strand, within yceIat 1117.458 kb on - strand, within yceIat 1117.470 kb on + strand, within yceIat 1117.478 kb on + strand, within yceIat 1117.519 kb on + strand, within yceIat 1117.570 kb on - strand, within yceIat 1117.647 kb on - strandat 1117.681 kb on - strandat 1117.681 kb on - strandat 1117.815 kb on - strand, within yceJat 1117.815 kb on - strand, within yceJat 1117.815 kb on - strand, within yceJat 1117.815 kb on - strand, within yceJat 1117.978 kb on - strand, within yceJat 1118.027 kb on + strand, within yceJat 1118.027 kb on + strand, within yceJat 1118.058 kb on - strand, within yceJ

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Per-strain Table

Position Strand Gene LocusTag Fraction .5% DMSO
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1,115,794 - -0.9
1,115,794 - -1.1
1,115,881 + -0.3
1,115,889 - +0.7
1,115,889 - +0.3
1,115,976 + +0.3
1,116,020 + +1.3
1,116,021 + -0.3
1,116,028 - -0.5
1,116,028 - +0.3
1,116,028 - -0.3
1,116,036 + -0.3
1,116,158 + yceA b1055 0.12 +6.0
1,116,193 - yceA b1055 0.15 +0.1
1,116,193 - yceA b1055 0.15 -0.8
1,116,243 + yceA b1055 0.20 -0.3
1,116,275 + yceA b1055 0.23 -0.0
1,116,297 - yceA b1055 0.25 +0.5
1,116,302 - yceA b1055 0.26 -0.9
1,116,580 - yceA b1055 0.52 -1.3
1,116,844 - yceA b1055 0.77 -1.3
1,116,848 + yceA b1055 0.78 -0.1
1,116,848 + yceA b1055 0.78 +0.3
1,116,912 - yceA b1055 0.84 -1.3
1,116,928 - yceA b1055 0.85 -0.8
1,116,930 + yceA b1055 0.85 +0.2
1,116,973 + yceA b1055 0.90 +0.1
1,116,975 + yceA b1055 0.90 +0.7
1,116,981 + -0.2
1,116,981 + -0.3
1,116,983 - -0.3
1,116,989 - +0.3
1,116,989 - -0.3
1,117,048 + -0.3
1,117,048 + +0.5
1,117,054 - -0.3
1,117,058 + +0.7
1,117,058 + -0.3
1,117,174 + -0.3
1,117,199 - yceI b1056 0.13 +0.1
1,117,208 - yceI b1056 0.15 -0.5
1,117,240 + yceI b1056 0.20 -0.7
1,117,240 - yceI b1056 0.20 +1.5
1,117,247 + yceI b1056 0.21 -0.3
1,117,252 - yceI b1056 0.22 -0.1
1,117,252 - yceI b1056 0.22 -0.0
1,117,254 + yceI b1056 0.23 -1.7
1,117,254 + yceI b1056 0.23 +0.5
1,117,254 - yceI b1056 0.23 +0.4
1,117,254 - yceI b1056 0.23 +0.3
1,117,254 - yceI b1056 0.23 -0.3
1,117,262 + yceI b1056 0.24 +0.5
1,117,262 + yceI b1056 0.24 -0.1
1,117,306 + yceI b1056 0.32 -0.1
1,117,306 + yceI b1056 0.32 +0.1
1,117,307 + yceI b1056 0.32 -1.7
1,117,422 - yceI b1056 0.52 -0.1
1,117,422 - yceI b1056 0.52 +1.7
1,117,454 + yceI b1056 0.57 -0.3
1,117,458 - yceI b1056 0.58 -1.3
1,117,470 + yceI b1056 0.60 +0.7
1,117,478 + yceI b1056 0.61 -0.3
1,117,519 + yceI b1056 0.69 -0.3
1,117,570 - yceI b1056 0.77 +0.1
1,117,647 - -0.5
1,117,681 - -0.9
1,117,681 - -2.9
1,117,815 - yceJ b1057 0.20 +0.4
1,117,815 - yceJ b1057 0.20 +0.3
1,117,815 - yceJ b1057 0.20 -1.3
1,117,815 - yceJ b1057 0.20 -0.7
1,117,978 - yceJ b1057 0.49 -2.9
1,118,027 + yceJ b1057 0.57 -0.3
1,118,027 + yceJ b1057 0.57 -0.3
1,118,058 - yceJ b1057 0.63 +0.3

Or see this region's nucleotide sequence