Strain Fitness in Escherichia coli BW25113 around b0442

Experiment: .5% DMSO

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntppiD and ybaV are separated by 150 nucleotidesybaV and ybaW are separated by 93 nucleotidesybaW and ybaX are separated by 51 nucleotides b0441: ppiD - peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI), at 461,139 to 463,010 ppiD b0442: ybaV - hypothetical protein (NCBI), at 463,161 to 463,532 ybaV b0443: ybaW - hypothetical protein (NCBI), at 463,626 to 464,024 ybaW b0444: ybaX - predicted aluminum resistance protein (NCBI), at 464,076 to 464,771 ybaX Position (kb) 463 464Strain fitness (log2 ratio) -2 -1 0 1 2at 462.192 kb on + strand, within ppiDat 462.210 kb on - strand, within ppiDat 462.210 kb on - strand, within ppiDat 462.255 kb on - strand, within ppiDat 462.287 kb on + strand, within ppiDat 462.290 kb on - strand, within ppiDat 462.334 kb on - strand, within ppiDat 462.357 kb on - strand, within ppiDat 462.357 kb on - strand, within ppiDat 462.359 kb on + strand, within ppiDat 462.359 kb on + strand, within ppiDat 462.378 kb on + strand, within ppiDat 462.387 kb on + strand, within ppiDat 462.449 kb on + strand, within ppiDat 462.491 kb on + strand, within ppiDat 462.502 kb on - strand, within ppiDat 462.508 kb on - strand, within ppiDat 462.531 kb on - strand, within ppiDat 462.544 kb on - strand, within ppiDat 462.544 kb on - strand, within ppiDat 462.588 kb on - strand, within ppiDat 462.614 kb on + strand, within ppiDat 462.617 kb on - strand, within ppiDat 462.682 kb on - strand, within ppiDat 462.696 kb on - strand, within ppiDat 462.696 kb on - strand, within ppiDat 462.720 kb on + strand, within ppiDat 462.816 kb on + strand, within ppiDat 462.816 kb on + strand, within ppiDat 462.833 kb on - strandat 462.833 kb on - strandat 462.903 kb on + strandat 462.903 kb on + strandat 462.918 kb on - strandat 462.923 kb on - strandat 463.049 kb on + strandat 463.049 kb on + strandat 463.173 kb on + strandat 463.173 kb on + strandat 463.182 kb on - strandat 463.184 kb on + strandat 463.184 kb on + strandat 463.184 kb on + strandat 463.184 kb on + strandat 463.186 kb on + strandat 463.192 kb on + strandat 463.192 kb on - strandat 463.192 kb on - strandat 463.193 kb on - strandat 463.204 kb on - strand, within ybaVat 463.205 kb on - strand, within ybaVat 463.205 kb on - strand, within ybaVat 463.288 kb on - strand, within ybaVat 463.303 kb on + strand, within ybaVat 463.438 kb on + strand, within ybaVat 463.465 kb on + strand, within ybaVat 463.473 kb on - strand, within ybaVat 463.483 kb on - strand, within ybaVat 463.518 kb on + strandat 463.590 kb on + strandat 463.608 kb on + strandat 463.655 kb on + strandat 463.655 kb on + strandat 463.761 kb on + strand, within ybaWat 463.761 kb on + strand, within ybaWat 463.775 kb on - strand, within ybaWat 463.775 kb on - strand, within ybaWat 463.826 kb on - strand, within ybaWat 463.879 kb on + strand, within ybaWat 463.879 kb on + strand, within ybaWat 463.897 kb on - strand, within ybaWat 463.911 kb on + strand, within ybaWat 463.920 kb on - strand, within ybaWat 463.920 kb on - strand, within ybaWat 463.977 kb on + strand, within ybaWat 463.977 kb on + strand, within ybaWat 463.977 kb on + strand, within ybaWat 463.977 kb on + strand, within ybaWat 463.979 kb on - strand, within ybaWat 463.986 kb on + strandat 463.986 kb on + strandat 464.035 kb on + strandat 464.035 kb on + strandat 464.209 kb on - strand, within ybaXat 464.209 kb on - strand, within ybaXat 464.226 kb on - strand, within ybaXat 464.230 kb on + strand, within ybaXat 464.287 kb on - strand, within ybaXat 464.332 kb on - strand, within ybaXat 464.332 kb on - strand, within ybaXat 464.344 kb on - strand, within ybaXat 464.346 kb on - strand, within ybaXat 464.346 kb on - strand, within ybaXat 464.433 kb on - strand, within ybaXat 464.433 kb on - strand, within ybaXat 464.511 kb on - strand, within ybaXat 464.511 kb on - strand, within ybaXat 464.523 kb on + strand, within ybaXat 464.523 kb on + strand, within ybaX

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction .5% DMSO
remove
462,192 + ppiD b0441 0.56 -0.1
462,210 - ppiD b0441 0.57 -1.6
462,210 - ppiD b0441 0.57 -0.0
462,255 - ppiD b0441 0.60 +1.0
462,287 + ppiD b0441 0.61 -0.7
462,290 - ppiD b0441 0.61 -0.5
462,334 - ppiD b0441 0.64 -0.1
462,357 - ppiD b0441 0.65 +0.2
462,357 - ppiD b0441 0.65 -0.6
462,359 + ppiD b0441 0.65 +0.3
462,359 + ppiD b0441 0.65 +0.0
462,378 + ppiD b0441 0.66 +0.4
462,387 + ppiD b0441 0.67 -0.0
462,449 + ppiD b0441 0.70 -0.5
462,491 + ppiD b0441 0.72 -0.0
462,502 - ppiD b0441 0.73 -0.8
462,508 - ppiD b0441 0.73 +1.0
462,531 - ppiD b0441 0.74 -0.3
462,544 - ppiD b0441 0.75 -0.0
462,544 - ppiD b0441 0.75 -0.5
462,588 - ppiD b0441 0.77 +1.2
462,614 + ppiD b0441 0.79 -0.0
462,617 - ppiD b0441 0.79 +1.0
462,682 - ppiD b0441 0.82 +0.4
462,696 - ppiD b0441 0.83 +1.0
462,696 - ppiD b0441 0.83 -1.0
462,720 + ppiD b0441 0.84 -0.4
462,816 + ppiD b0441 0.90 +0.1
462,816 + ppiD b0441 0.90 -0.3
462,833 - -1.9
462,833 - -0.5
462,903 + -0.3
462,903 + +0.4
462,918 - -0.0
462,923 - -1.3
463,049 + -0.5
463,049 + -0.6
463,173 + -0.0
463,173 + -0.5
463,182 - -0.5
463,184 + +0.6
463,184 + -0.8
463,184 + +0.3
463,184 + -1.0
463,186 + +1.7
463,192 + +0.1
463,192 - -0.9
463,192 - -0.0
463,193 - -0.7
463,204 - ybaV b0442 0.12 -0.8
463,205 - ybaV b0442 0.12 +0.8
463,205 - ybaV b0442 0.12 +1.4
463,288 - ybaV b0442 0.34 -0.8
463,303 + ybaV b0442 0.38 +0.9
463,438 + ybaV b0442 0.74 +0.5
463,465 + ybaV b0442 0.82 -1.0
463,473 - ybaV b0442 0.84 +0.5
463,483 - ybaV b0442 0.87 -0.0
463,518 + -0.6
463,590 + -0.6
463,608 + -0.7
463,655 + -0.4
463,655 + -1.0
463,761 + ybaW b0443 0.34 +0.3
463,761 + ybaW b0443 0.34 +0.7
463,775 - ybaW b0443 0.37 -1.4
463,775 - ybaW b0443 0.37 -0.5
463,826 - ybaW b0443 0.50 -1.0
463,879 + ybaW b0443 0.63 -0.4
463,879 + ybaW b0443 0.63 -0.2
463,897 - ybaW b0443 0.68 -0.7
463,911 + ybaW b0443 0.71 -1.3
463,920 - ybaW b0443 0.74 -0.0
463,920 - ybaW b0443 0.74 +1.3
463,977 + ybaW b0443 0.88 -0.0
463,977 + ybaW b0443 0.88 -0.0
463,977 + ybaW b0443 0.88 -2.0
463,977 + ybaW b0443 0.88 -0.0
463,979 - ybaW b0443 0.88 -0.4
463,986 + -0.0
463,986 + -0.3
464,035 + +0.0
464,035 + -0.0
464,209 - ybaX b0444 0.19 -0.1
464,209 - ybaX b0444 0.19 +0.1
464,226 - ybaX b0444 0.22 -0.1
464,230 + ybaX b0444 0.22 -0.4
464,287 - ybaX b0444 0.30 -2.1
464,332 - ybaX b0444 0.37 +0.7
464,332 - ybaX b0444 0.37 -0.1
464,344 - ybaX b0444 0.39 -0.1
464,346 - ybaX b0444 0.39 +0.5
464,346 - ybaX b0444 0.39 +0.0
464,433 - ybaX b0444 0.51 +1.8
464,433 - ybaX b0444 0.51 -0.8
464,511 - ybaX b0444 0.62 +0.2
464,511 - ybaX b0444 0.62 -0.2
464,523 + ybaX b0444 0.64 +0.1
464,523 + ybaX b0444 0.64 +0.1

Or see this region's nucleotide sequence