Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3897 and Atu3898 are separated by 107 nucleotides Atu3898 and Atu3899 are separated by 141 nucleotides
Atu3897: Atu3897 - glycerol-3-phosphate dehydrogenase, at 992,268 to 993,791
Atu3897
Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672
Atu3898
Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241
Atu3899
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1
2 at 992.922 kb on + strand, within Atu3897 at 992.922 kb on + strand, within Atu3897 at 992.930 kb on - strand, within Atu3897 at 992.930 kb on - strand, within Atu3897 at 992.975 kb on + strand, within Atu3897 at 992.975 kb on + strand, within Atu3897 at 992.975 kb on + strand, within Atu3897 at 992.977 kb on + strand, within Atu3897 at 993.094 kb on - strand, within Atu3897 at 993.130 kb on + strand, within Atu3897 at 993.189 kb on - strand, within Atu3897 at 993.235 kb on + strand, within Atu3897 at 993.250 kb on + strand, within Atu3897 at 993.250 kb on + strand, within Atu3897 at 993.258 kb on - strand, within Atu3897 at 993.315 kb on + strand, within Atu3897 at 993.320 kb on + strand, within Atu3897 at 993.461 kb on + strand, within Atu3897 at 993.474 kb on - strand, within Atu3897 at 993.486 kb on + strand, within Atu3897 at 993.504 kb on - strand, within Atu3897 at 993.505 kb on - strand, within Atu3897 at 993.556 kb on + strand, within Atu3897 at 993.577 kb on + strand, within Atu3897 at 993.584 kb on - strand, within Atu3897 at 993.603 kb on - strand, within Atu3897 at 993.611 kb on + strand, within Atu3897 at 993.733 kb on - strand at 993.746 kb on - strand at 993.795 kb on - strand at 993.943 kb on + strand at 994.000 kb on - strand, within Atu3898 at 994.000 kb on - strand, within Atu3898 at 994.101 kb on + strand, within Atu3898 at 994.124 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.228 kb on + strand, within Atu3898 at 994.290 kb on - strand, within Atu3898 at 994.290 kb on - strand, within Atu3898 at 994.348 kb on - strand, within Atu3898 at 994.531 kb on + strand, within Atu3898 at 994.550 kb on + strand, within Atu3898 at 994.570 kb on + strand, within Atu3898 at 994.612 kb on + strand at 994.732 kb on + strand at 994.739 kb on - strand at 994.754 kb on + strand at 994.844 kb on + strand at 994.849 kb on + strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.964 kb on + strand, within Atu3899 at 995.027 kb on - strand, within Atu3899 at 995.043 kb on + strand, within Atu3899 at 995.043 kb on + strand, within Atu3899 at 995.081 kb on - strand, within Atu3899 at 995.107 kb on - strand, within Atu3899 at 995.165 kb on - strand, within Atu3899 at 995.191 kb on + strand, within Atu3899 at 995.205 kb on - strand, within Atu3899 at 995.237 kb on + strand, within Atu3899 at 995.341 kb on + strand, within Atu3899 at 995.349 kb on - strand, within Atu3899 at 995.407 kb on - strand, within Atu3899 at 995.472 kb on - strand, within Atu3899 at 995.489 kb on + strand, within Atu3899 at 995.509 kb on + strand, within Atu3899 at 995.548 kb on + strand, within Atu3899 at 995.557 kb on - strand, within Atu3899 at 995.567 kb on - strand, within Atu3899 at 995.650 kb on - strand, within Atu3899
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 992,922 + Atu3897 0.43 +0.1 992,922 + Atu3897 0.43 +0.8 992,930 - Atu3897 0.43 +0.2 992,930 - Atu3897 0.43 -0.5 992,975 + Atu3897 0.46 +0.2 992,975 + Atu3897 0.46 +2.5 992,975 + Atu3897 0.46 +0.1 992,977 + Atu3897 0.47 -0.4 993,094 - Atu3897 0.54 -0.3 993,130 + Atu3897 0.57 +0.3 993,189 - Atu3897 0.60 +0.9 993,235 + Atu3897 0.63 +0.0 993,250 + Atu3897 0.64 +0.2 993,250 + Atu3897 0.64 +0.8 993,258 - Atu3897 0.65 -0.3 993,315 + Atu3897 0.69 -0.4 993,320 + Atu3897 0.69 +0.4 993,461 + Atu3897 0.78 -0.2 993,474 - Atu3897 0.79 +0.1 993,486 + Atu3897 0.80 -1.3 993,504 - Atu3897 0.81 -0.7 993,505 - Atu3897 0.81 +0.0 993,556 + Atu3897 0.85 -1.0 993,577 + Atu3897 0.86 -0.3 993,584 - Atu3897 0.86 -1.0 993,603 - Atu3897 0.88 -0.3 993,611 + Atu3897 0.88 -0.1 993,733 - -2.4 993,746 - +1.3 993,795 - -1.6 993,943 + -1.3 994,000 - Atu3898 0.13 +0.2 994,000 - Atu3898 0.13 -1.1 994,101 + Atu3898 0.26 -1.0 994,124 + Atu3898 0.29 -0.4 994,134 + Atu3898 0.30 -1.1 994,134 + Atu3898 0.30 -1.2 994,134 + Atu3898 0.30 +0.5 994,228 + Atu3898 0.43 -1.3 994,290 - Atu3898 0.51 -0.9 994,290 - Atu3898 0.51 -1.4 994,348 - Atu3898 0.58 -1.1 994,531 + Atu3898 0.82 -0.5 994,550 + Atu3898 0.84 -0.7 994,570 + Atu3898 0.87 -1.1 994,612 + -1.9 994,732 + -0.6 994,739 - +0.1 994,754 + -2.0 994,844 + -0.0 994,849 + -0.1 994,852 - +0.6 994,852 - -1.9 994,964 + Atu3899 0.11 -0.8 995,027 - Atu3899 0.15 -1.5 995,043 + Atu3899 0.16 -0.4 995,043 + Atu3899 0.16 -1.8 995,081 - Atu3899 0.19 -0.3 995,107 - Atu3899 0.21 +0.1 995,165 - Atu3899 0.25 +0.1 995,191 + Atu3899 0.26 -1.0 995,205 - Atu3899 0.27 +0.3 995,237 + Atu3899 0.30 +0.9 995,341 + Atu3899 0.37 -0.5 995,349 - Atu3899 0.37 +0.5 995,407 - Atu3899 0.42 -0.5 995,472 - Atu3899 0.46 +1.2 995,489 + Atu3899 0.47 -0.0 995,509 + Atu3899 0.49 -0.6 995,548 + Atu3899 0.51 -0.1 995,557 - Atu3899 0.52 -0.2 995,567 - Atu3899 0.53 +0.0 995,650 - Atu3899 0.59 +0.4
Or see this region's nucleotide sequence