Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3787 and Atu3788 are separated by 54 nucleotides Atu3788 and Atu3789 are separated by 12 nucleotides
Atu3787: Atu3787 - two component sensor kinase, at 875,369 to 878,071
Atu3787
Atu3788: Atu3788 - potassium-transporting ATPase subunit C, at 878,126 to 878,692
Atu3788
Atu3789: Atu3789 - potassium-transporting ATPase subunit B, at 878,705 to 880,789
Atu3789
Position (kb) 878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 877.127 kb on + strand, within Atu3787 at 877.213 kb on - strand, within Atu3787 at 877.285 kb on + strand, within Atu3787 at 877.340 kb on + strand, within Atu3787 at 877.350 kb on + strand, within Atu3787 at 877.401 kb on - strand, within Atu3787 at 877.418 kb on - strand, within Atu3787 at 877.467 kb on + strand, within Atu3787 at 877.476 kb on - strand, within Atu3787 at 877.504 kb on - strand, within Atu3787 at 877.518 kb on - strand, within Atu3787 at 877.564 kb on - strand, within Atu3787 at 877.587 kb on - strand, within Atu3787 at 877.597 kb on - strand, within Atu3787 at 877.612 kb on + strand, within Atu3787 at 877.632 kb on - strand, within Atu3787 at 877.688 kb on - strand, within Atu3787 at 877.713 kb on + strand, within Atu3787 at 877.713 kb on + strand, within Atu3787 at 877.721 kb on - strand, within Atu3787 at 877.750 kb on - strand, within Atu3787 at 877.760 kb on + strand, within Atu3787 at 877.792 kb on + strand, within Atu3787 at 877.809 kb on + strand at 877.831 kb on + strand at 877.839 kb on - strand at 878.069 kb on + strand at 878.089 kb on + strand at 878.241 kb on + strand, within Atu3788 at 878.336 kb on + strand, within Atu3788 at 878.442 kb on - strand, within Atu3788 at 878.459 kb on + strand, within Atu3788 at 878.467 kb on - strand, within Atu3788 at 878.499 kb on - strand, within Atu3788 at 878.511 kb on + strand, within Atu3788 at 878.523 kb on - strand, within Atu3788 at 878.607 kb on - strand, within Atu3788 at 878.618 kb on - strand, within Atu3788 at 878.657 kb on + strand at 878.711 kb on - strand at 878.711 kb on - strand at 878.713 kb on + strand at 878.720 kb on - strand at 878.861 kb on - strand at 878.919 kb on + strand, within Atu3789 at 878.920 kb on - strand, within Atu3789 at 878.927 kb on - strand, within Atu3789 at 879.031 kb on - strand, within Atu3789 at 879.113 kb on + strand, within Atu3789 at 879.146 kb on + strand, within Atu3789 at 879.146 kb on + strand, within Atu3789 at 879.213 kb on + strand, within Atu3789 at 879.221 kb on - strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.225 kb on + strand, within Atu3789 at 879.227 kb on - strand, within Atu3789 at 879.243 kb on - strand, within Atu3789 at 879.614 kb on + strand, within Atu3789
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 877,127 + Atu3787 0.65 +0.5 877,213 - Atu3787 0.68 +0.0 877,285 + Atu3787 0.71 -0.1 877,340 + Atu3787 0.73 -0.1 877,350 + Atu3787 0.73 +0.2 877,401 - Atu3787 0.75 +0.6 877,418 - Atu3787 0.76 -0.2 877,467 + Atu3787 0.78 -0.2 877,476 - Atu3787 0.78 -3.2 877,504 - Atu3787 0.79 -0.3 877,518 - Atu3787 0.80 -0.6 877,564 - Atu3787 0.81 -1.0 877,587 - Atu3787 0.82 +0.2 877,597 - Atu3787 0.82 +0.5 877,612 + Atu3787 0.83 +1.0 877,632 - Atu3787 0.84 -0.1 877,688 - Atu3787 0.86 -0.1 877,713 + Atu3787 0.87 +0.3 877,713 + Atu3787 0.87 -0.1 877,721 - Atu3787 0.87 -0.1 877,750 - Atu3787 0.88 +0.3 877,760 + Atu3787 0.88 +0.0 877,792 + Atu3787 0.90 -0.3 877,809 + -1.7 877,831 + +0.5 877,839 - -0.2 878,069 + -0.6 878,089 + -0.1 878,241 + Atu3788 0.20 +0.4 878,336 + Atu3788 0.37 +0.5 878,442 - Atu3788 0.56 +0.6 878,459 + Atu3788 0.59 +1.0 878,467 - Atu3788 0.60 +1.1 878,499 - Atu3788 0.66 -0.0 878,511 + Atu3788 0.68 -0.0 878,523 - Atu3788 0.70 -0.5 878,607 - Atu3788 0.85 +0.6 878,618 - Atu3788 0.87 +0.2 878,657 + -0.2 878,711 - -1.0 878,711 - +0.0 878,713 + -0.5 878,720 - +0.5 878,861 - -0.5 878,919 + Atu3789 0.10 +0.0 878,920 - Atu3789 0.10 +0.4 878,927 - Atu3789 0.11 -0.3 879,031 - Atu3789 0.16 -0.2 879,113 + Atu3789 0.20 +0.5 879,146 + Atu3789 0.21 +0.8 879,146 + Atu3789 0.21 +0.4 879,213 + Atu3789 0.24 -0.7 879,221 - Atu3789 0.25 -0.2 879,225 + Atu3789 0.25 -0.2 879,225 + Atu3789 0.25 +0.9 879,225 + Atu3789 0.25 +0.6 879,227 - Atu3789 0.25 +0.4 879,243 - Atu3789 0.26 -0.4 879,614 + Atu3789 0.44 -0.1
Or see this region's nucleotide sequence