Strain Fitness in Escherichia coli BW25113 around b1293
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,351,739 | - | -2.0 | |||
1,352,074 | - | sapC | b1292 | 0.47 | -0.4 |
1,352,113 | + | sapC | b1292 | 0.52 | -2.8 |
1,352,173 | + | sapC | b1292 | 0.58 | +0.6 |
1,352,173 | + | sapC | b1292 | 0.58 | -0.4 |
1,352,254 | + | sapC | b1292 | 0.68 | -2.0 |
1,352,290 | - | sapC | b1292 | 0.72 | -1.4 |
1,352,351 | - | sapC | b1292 | 0.78 | +0.1 |
1,352,438 | + | sapC | b1292 | 0.88 | -1.4 |
1,352,770 | - | sapB | b1293 | 0.25 | -1.0 |
1,352,770 | - | sapB | b1293 | 0.25 | -1.0 |
1,352,790 | + | sapB | b1293 | 0.27 | -1.5 |
1,353,131 | + | sapB | b1293 | 0.62 | +0.5 |
1,353,522 | + | -1.5 | |||
1,353,566 | - | +0.0 | |||
1,353,747 | + | sapA | b1294 | 0.16 | +0.5 |
1,353,747 | + | sapA | b1294 | 0.16 | +0.8 |
1,353,825 | + | sapA | b1294 | 0.20 | -0.5 |
1,353,825 | + | sapA | b1294 | 0.20 | +1.1 |
1,353,841 | + | sapA | b1294 | 0.21 | -1.5 |
1,353,841 | + | sapA | b1294 | 0.21 | -0.5 |
1,353,844 | - | sapA | b1294 | 0.21 | +1.0 |
1,353,890 | - | sapA | b1294 | 0.24 | +1.1 |
1,353,890 | - | sapA | b1294 | 0.24 | +1.1 |
1,353,912 | - | sapA | b1294 | 0.26 | -0.6 |
1,353,987 | + | sapA | b1294 | 0.30 | -0.5 |
1,354,118 | - | sapA | b1294 | 0.38 | +0.5 |
1,354,136 | + | sapA | b1294 | 0.39 | +1.9 |
1,354,136 | + | sapA | b1294 | 0.39 | -0.2 |
1,354,136 | + | sapA | b1294 | 0.39 | +1.3 |
1,354,136 | + | sapA | b1294 | 0.39 | -0.2 |
1,354,320 | - | sapA | b1294 | 0.50 | -0.5 |
1,354,330 | - | sapA | b1294 | 0.51 | +0.3 |
1,354,427 | - | sapA | b1294 | 0.57 | +1.3 |
1,354,486 | - | sapA | b1294 | 0.61 | -0.9 |
1,354,486 | - | sapA | b1294 | 0.61 | +0.7 |
Or see this region's nucleotide sequence