Strain Fitness in Escherichia coli BW25113 around b0649
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
678,442 | + | ybeT | b0647 | 0.66 | -0.2 |
678,447 | + | ybeT | b0647 | 0.67 | -0.2 |
678,452 | + | ybeT | b0647 | 0.68 | +0.6 |
678,464 | + | ybeT | b0647 | 0.70 | -0.7 |
678,465 | + | ybeT | b0647 | 0.70 | -0.2 |
678,465 | + | ybeT | b0647 | 0.70 | -0.2 |
678,469 | + | ybeT | b0647 | 0.71 | -0.6 |
678,475 | + | ybeT | b0647 | 0.72 | +2.4 |
678,475 | + | ybeT | b0647 | 0.72 | -1.5 |
678,481 | + | ybeT | b0647 | 0.73 | +0.8 |
678,481 | + | ybeT | b0647 | 0.73 | +0.8 |
678,485 | + | ybeT | b0647 | 0.74 | -0.2 |
678,485 | + | ybeT | b0647 | 0.74 | -0.2 |
678,485 | + | ybeT | b0647 | 0.74 | -0.2 |
678,485 | + | ybeT | b0647 | 0.74 | -0.2 |
678,485 | + | ybeT | b0647 | 0.74 | -0.2 |
678,543 | + | ybeT | b0647 | 0.84 | -0.2 |
678,566 | + | ybeT | b0647 | 0.88 | -0.2 |
678,801 | - | -0.2 | |||
678,907 | - | ybeU | b0648 | 0.25 | +1.4 |
678,917 | - | ybeU | b0648 | 0.26 | +0.8 |
678,946 | + | ybeU | b0648 | 0.30 | -0.2 |
678,949 | - | ybeU | b0648 | 0.31 | -0.2 |
678,964 | - | ybeU | b0648 | 0.33 | -0.7 |
678,966 | - | ybeU | b0648 | 0.33 | -1.2 |
678,966 | - | ybeU | b0648 | 0.33 | +0.8 |
678,966 | - | ybeU | b0648 | 0.33 | -0.2 |
678,966 | - | ybeU | b0648 | 0.33 | -0.4 |
678,966 | - | ybeU | b0648 | 0.33 | -0.2 |
678,969 | + | ybeU | b0648 | 0.34 | -0.2 |
678,977 | - | ybeU | b0648 | 0.35 | +0.8 |
678,977 | - | ybeU | b0648 | 0.35 | -0.2 |
678,977 | - | ybeU | b0648 | 0.35 | -0.2 |
678,977 | - | ybeU | b0648 | 0.35 | -1.2 |
679,009 | - | ybeU | b0648 | 0.39 | -0.7 |
679,014 | + | ybeU | b0648 | 0.40 | -0.2 |
679,045 | - | ybeU | b0648 | 0.44 | -1.4 |
679,051 | + | ybeU | b0648 | 0.45 | -2.5 |
679,058 | + | ybeU | b0648 | 0.46 | +0.2 |
679,059 | - | ybeU | b0648 | 0.46 | -0.2 |
679,059 | - | ybeU | b0648 | 0.46 | +0.1 |
679,072 | - | ybeU | b0648 | 0.48 | -2.2 |
679,113 | - | ybeU | b0648 | 0.54 | -1.2 |
679,121 | + | ybeU | b0648 | 0.55 | -0.2 |
679,243 | - | ybeU | b0648 | 0.72 | -0.2 |
679,293 | - | ybeU | b0648 | 0.79 | +0.4 |
679,293 | - | ybeU | b0648 | 0.79 | -1.2 |
679,350 | + | ybeU | b0648 | 0.87 | -0.2 |
679,381 | + | -0.2 | |||
679,414 | + | -2.2 | |||
679,414 | + | +0.1 | |||
679,415 | + | +0.0 | |||
679,415 | + | +1.8 | |||
679,538 | + | -0.5 | |||
679,547 | + | -0.2 | |||
679,547 | + | -0.5 | |||
679,547 | + | +1.3 | |||
679,547 | + | +0.2 | |||
679,569 | - | +0.0 | |||
679,571 | + | -0.5 | |||
679,574 | - | -0.9 | |||
679,576 | - | +0.6 | |||
679,785 | - | djlC | b0649 | 0.24 | -1.9 |
679,788 | + | djlC | b0649 | 0.24 | -1.7 |
679,828 | - | djlC | b0649 | 0.27 | +0.4 |
679,964 | - | djlC | b0649 | 0.36 | -1.2 |
679,964 | - | djlC | b0649 | 0.36 | -0.2 |
679,979 | - | djlC | b0649 | 0.37 | -1.2 |
680,012 | + | djlC | b0649 | 0.40 | -0.5 |
680,020 | - | djlC | b0649 | 0.40 | -0.7 |
680,034 | - | djlC | b0649 | 0.41 | -1.2 |
680,034 | - | djlC | b0649 | 0.41 | -1.2 |
680,136 | - | djlC | b0649 | 0.48 | -1.7 |
680,160 | - | djlC | b0649 | 0.50 | +0.1 |
680,196 | + | djlC | b0649 | 0.52 | -0.2 |
680,196 | + | djlC | b0649 | 0.52 | -0.2 |
680,234 | + | djlC | b0649 | 0.55 | -1.2 |
680,234 | + | djlC | b0649 | 0.55 | +0.7 |
680,580 | - | djlC | b0649 | 0.79 | -1.0 |
680,632 | + | djlC | b0649 | 0.82 | -0.2 |
680,632 | + | djlC | b0649 | 0.82 | +0.8 |
680,643 | + | djlC | b0649 | 0.83 | -0.7 |
680,643 | + | djlC | b0649 | 0.83 | -2.0 |
680,841 | + | +0.1 | |||
680,857 | - | -1.0 | |||
680,936 | + | -0.5 | |||
681,182 | - | hscC | b0650 | 0.14 | +0.1 |
681,210 | + | hscC | b0650 | 0.16 | -1.2 |
681,214 | - | hscC | b0650 | 0.16 | +0.1 |
681,390 | + | hscC | b0650 | 0.27 | -1.2 |
681,390 | + | hscC | b0650 | 0.27 | +1.2 |
681,466 | - | hscC | b0650 | 0.31 | -0.2 |
Or see this region's nucleotide sequence