Strain Fitness in Escherichia coli BW25113 around b0649

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybeT and ybeU are separated by 101 nucleotidesybeU and djlC overlap by 4 nucleotidesdjlC and hscC are separated by 59 nucleotides b0647: ybeT - conserved outer membrane protein (NCBI), at 678,075 to 678,629 ybeT b0648: ybeU - predicted tRNA ligase (NCBI), at 678,731 to 679,438 ybeU b0649: djlC - Hsc56 co-chaperone of HscC (NCBI), at 679,435 to 680,886 djlC b0650: hscC - Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI), at 680,946 to 682,616 hscC Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 678.442 kb on + strand, within ybeTat 678.447 kb on + strand, within ybeTat 678.452 kb on + strand, within ybeTat 678.464 kb on + strand, within ybeTat 678.465 kb on + strand, within ybeTat 678.465 kb on + strand, within ybeTat 678.469 kb on + strand, within ybeTat 678.475 kb on + strand, within ybeTat 678.475 kb on + strand, within ybeTat 678.481 kb on + strand, within ybeTat 678.481 kb on + strand, within ybeTat 678.485 kb on + strand, within ybeTat 678.485 kb on + strand, within ybeTat 678.485 kb on + strand, within ybeTat 678.485 kb on + strand, within ybeTat 678.485 kb on + strand, within ybeTat 678.543 kb on + strand, within ybeTat 678.566 kb on + strand, within ybeTat 678.801 kb on - strandat 678.907 kb on - strand, within ybeUat 678.917 kb on - strand, within ybeUat 678.946 kb on + strand, within ybeUat 678.949 kb on - strand, within ybeUat 678.964 kb on - strand, within ybeUat 678.966 kb on - strand, within ybeUat 678.966 kb on - strand, within ybeUat 678.966 kb on - strand, within ybeUat 678.966 kb on - strand, within ybeUat 678.966 kb on - strand, within ybeUat 678.969 kb on + strand, within ybeUat 678.977 kb on - strand, within ybeUat 678.977 kb on - strand, within ybeUat 678.977 kb on - strand, within ybeUat 678.977 kb on - strand, within ybeUat 679.009 kb on - strand, within ybeUat 679.014 kb on + strand, within ybeUat 679.045 kb on - strand, within ybeUat 679.051 kb on + strand, within ybeUat 679.058 kb on + strand, within ybeUat 679.059 kb on - strand, within ybeUat 679.059 kb on - strand, within ybeUat 679.072 kb on - strand, within ybeUat 679.113 kb on - strand, within ybeUat 679.121 kb on + strand, within ybeUat 679.243 kb on - strand, within ybeUat 679.293 kb on - strand, within ybeUat 679.293 kb on - strand, within ybeUat 679.350 kb on + strand, within ybeUat 679.381 kb on + strandat 679.414 kb on + strandat 679.414 kb on + strandat 679.415 kb on + strandat 679.415 kb on + strandat 679.538 kb on + strandat 679.547 kb on + strandat 679.547 kb on + strandat 679.547 kb on + strandat 679.547 kb on + strandat 679.569 kb on - strandat 679.571 kb on + strandat 679.574 kb on - strandat 679.576 kb on - strandat 679.785 kb on - strand, within djlCat 679.788 kb on + strand, within djlCat 679.828 kb on - strand, within djlCat 679.964 kb on - strand, within djlCat 679.964 kb on - strand, within djlCat 679.979 kb on - strand, within djlCat 680.012 kb on + strand, within djlCat 680.020 kb on - strand, within djlCat 680.034 kb on - strand, within djlCat 680.034 kb on - strand, within djlCat 680.136 kb on - strand, within djlCat 680.160 kb on - strand, within djlCat 680.196 kb on + strand, within djlCat 680.196 kb on + strand, within djlCat 680.234 kb on + strand, within djlCat 680.234 kb on + strand, within djlCat 680.580 kb on - strand, within djlCat 680.632 kb on + strand, within djlCat 680.632 kb on + strand, within djlCat 680.643 kb on + strand, within djlCat 680.643 kb on + strand, within djlCat 680.841 kb on + strandat 680.857 kb on - strandat 680.936 kb on + strandat 681.182 kb on - strand, within hscCat 681.210 kb on + strand, within hscCat 681.214 kb on - strand, within hscCat 681.390 kb on + strand, within hscCat 681.390 kb on + strand, within hscCat 681.466 kb on - strand, within hscC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
678,442 + ybeT b0647 0.66 -0.2
678,447 + ybeT b0647 0.67 -0.2
678,452 + ybeT b0647 0.68 +0.6
678,464 + ybeT b0647 0.70 -0.7
678,465 + ybeT b0647 0.70 -0.2
678,465 + ybeT b0647 0.70 -0.2
678,469 + ybeT b0647 0.71 -0.6
678,475 + ybeT b0647 0.72 +2.4
678,475 + ybeT b0647 0.72 -1.5
678,481 + ybeT b0647 0.73 +0.8
678,481 + ybeT b0647 0.73 +0.8
678,485 + ybeT b0647 0.74 -0.2
678,485 + ybeT b0647 0.74 -0.2
678,485 + ybeT b0647 0.74 -0.2
678,485 + ybeT b0647 0.74 -0.2
678,485 + ybeT b0647 0.74 -0.2
678,543 + ybeT b0647 0.84 -0.2
678,566 + ybeT b0647 0.88 -0.2
678,801 - -0.2
678,907 - ybeU b0648 0.25 +1.4
678,917 - ybeU b0648 0.26 +0.8
678,946 + ybeU b0648 0.30 -0.2
678,949 - ybeU b0648 0.31 -0.2
678,964 - ybeU b0648 0.33 -0.7
678,966 - ybeU b0648 0.33 -1.2
678,966 - ybeU b0648 0.33 +0.8
678,966 - ybeU b0648 0.33 -0.2
678,966 - ybeU b0648 0.33 -0.4
678,966 - ybeU b0648 0.33 -0.2
678,969 + ybeU b0648 0.34 -0.2
678,977 - ybeU b0648 0.35 +0.8
678,977 - ybeU b0648 0.35 -0.2
678,977 - ybeU b0648 0.35 -0.2
678,977 - ybeU b0648 0.35 -1.2
679,009 - ybeU b0648 0.39 -0.7
679,014 + ybeU b0648 0.40 -0.2
679,045 - ybeU b0648 0.44 -1.4
679,051 + ybeU b0648 0.45 -2.5
679,058 + ybeU b0648 0.46 +0.2
679,059 - ybeU b0648 0.46 -0.2
679,059 - ybeU b0648 0.46 +0.1
679,072 - ybeU b0648 0.48 -2.2
679,113 - ybeU b0648 0.54 -1.2
679,121 + ybeU b0648 0.55 -0.2
679,243 - ybeU b0648 0.72 -0.2
679,293 - ybeU b0648 0.79 +0.4
679,293 - ybeU b0648 0.79 -1.2
679,350 + ybeU b0648 0.87 -0.2
679,381 + -0.2
679,414 + -2.2
679,414 + +0.1
679,415 + +0.0
679,415 + +1.8
679,538 + -0.5
679,547 + -0.2
679,547 + -0.5
679,547 + +1.3
679,547 + +0.2
679,569 - +0.0
679,571 + -0.5
679,574 - -0.9
679,576 - +0.6
679,785 - djlC b0649 0.24 -1.9
679,788 + djlC b0649 0.24 -1.7
679,828 - djlC b0649 0.27 +0.4
679,964 - djlC b0649 0.36 -1.2
679,964 - djlC b0649 0.36 -0.2
679,979 - djlC b0649 0.37 -1.2
680,012 + djlC b0649 0.40 -0.5
680,020 - djlC b0649 0.40 -0.7
680,034 - djlC b0649 0.41 -1.2
680,034 - djlC b0649 0.41 -1.2
680,136 - djlC b0649 0.48 -1.7
680,160 - djlC b0649 0.50 +0.1
680,196 + djlC b0649 0.52 -0.2
680,196 + djlC b0649 0.52 -0.2
680,234 + djlC b0649 0.55 -1.2
680,234 + djlC b0649 0.55 +0.7
680,580 - djlC b0649 0.79 -1.0
680,632 + djlC b0649 0.82 -0.2
680,632 + djlC b0649 0.82 +0.8
680,643 + djlC b0649 0.83 -0.7
680,643 + djlC b0649 0.83 -2.0
680,841 + +0.1
680,857 - -1.0
680,936 + -0.5
681,182 - hscC b0650 0.14 +0.1
681,210 + hscC b0650 0.16 -1.2
681,214 - hscC b0650 0.16 +0.1
681,390 + hscC b0650 0.27 -1.2
681,390 + hscC b0650 0.27 +1.2
681,466 - hscC b0650 0.31 -0.2

Or see this region's nucleotide sequence