Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tsx and yajI are separated by 298 nucleotides yajI and ybaD are separated by 150 nucleotides ybaD and ribD are separated by 3 nucleotides
b0411: tsx - nucleoside channel, receptor of phage T6 and colicin K (NCBI), at 430,353 to 431,237
tsx
b0412: yajI - orf, hypothetical protein (VIMSS), at 431,536 to 432,075
yajI
b0413: ybaD - hypothetical protein (NCBI), at 432,226 to 432,675
ybaD
b0414: ribD - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase (NCBI), at 432,679 to 433,782
ribD
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.568 kb on - strand, within tsx at 430.624 kb on - strand at 430.709 kb on + strand, within tsx at 430.709 kb on + strand, within tsx at 430.753 kb on + strand, within tsx at 430.759 kb on + strand, within tsx at 430.759 kb on + strand, within tsx at 430.777 kb on - strand, within tsx at 430.779 kb on + strand, within tsx at 430.779 kb on + strand, within tsx at 430.796 kb on - strand, within tsx at 430.803 kb on - strand, within tsx at 430.803 kb on - strand, within tsx at 430.822 kb on + strand, within tsx at 430.823 kb on + strand, within tsx at 430.847 kb on - strand, within tsx at 430.863 kb on + strand, within tsx at 430.869 kb on - strand, within tsx at 430.869 kb on - strand, within tsx at 430.892 kb on + strand, within tsx at 430.905 kb on - strand, within tsx at 430.906 kb on + strand, within tsx at 431.038 kb on + strand, within tsx at 431.062 kb on + strand, within tsx at 431.212 kb on - strand at 431.212 kb on - strand at 431.311 kb on - strand at 431.365 kb on - strand at 431.365 kb on - strand at 431.541 kb on + strand at 431.565 kb on - strand at 431.709 kb on - strand, within yajI at 431.770 kb on - strand, within yajI at 431.775 kb on + strand, within yajI at 431.783 kb on - strand, within yajI at 431.783 kb on - strand, within yajI at 431.845 kb on + strand, within yajI at 431.901 kb on - strand, within yajI at 431.901 kb on - strand, within yajI at 431.973 kb on + strand, within yajI at 431.973 kb on + strand, within yajI at 432.007 kb on + strand, within yajI at 432.007 kb on + strand, within yajI at 432.017 kb on - strand, within yajI at 432.056 kb on - strand at 432.071 kb on + strand at 432.071 kb on + strand at 432.078 kb on - strand at 432.105 kb on + strand at 432.105 kb on + strand at 432.115 kb on + strand at 432.207 kb on - strand at 432.663 kb on + strand at 432.669 kb on + strand at 432.690 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 430,568 - tsx b0411 0.24 -0.3 430,624 - -0.0 430,709 + tsx b0411 0.40 -2.2 430,709 + tsx b0411 0.40 +0.1 430,753 + tsx b0411 0.45 +0.2 430,759 + tsx b0411 0.46 +0.5 430,759 + tsx b0411 0.46 -0.0 430,777 - tsx b0411 0.48 +0.2 430,779 + tsx b0411 0.48 -1.5 430,779 + tsx b0411 0.48 +0.3 430,796 - tsx b0411 0.50 -1.2 430,803 - tsx b0411 0.51 -0.7 430,803 - tsx b0411 0.51 +0.2 430,822 + tsx b0411 0.53 +0.1 430,823 + tsx b0411 0.53 +0.2 430,847 - tsx b0411 0.56 -0.8 430,863 + tsx b0411 0.58 -0.4 430,869 - tsx b0411 0.58 -1.0 430,869 - tsx b0411 0.58 -1.4 430,892 + tsx b0411 0.61 +0.8 430,905 - tsx b0411 0.62 +1.0 430,906 + tsx b0411 0.62 +0.2 431,038 + tsx b0411 0.77 -0.4 431,062 + tsx b0411 0.80 +0.5 431,212 - -0.7 431,212 - +1.0 431,311 - -0.8 431,365 - +0.5 431,365 - -0.0 431,541 + -0.6 431,565 - -0.4 431,709 - yajI b0412 0.32 -1.5 431,770 - yajI b0412 0.43 +1.0 431,775 + yajI b0412 0.44 +0.4 431,783 - yajI b0412 0.46 +1.0 431,783 - yajI b0412 0.46 -0.7 431,845 + yajI b0412 0.57 -0.6 431,901 - yajI b0412 0.68 -2.4 431,901 - yajI b0412 0.68 +2.5 431,973 + yajI b0412 0.81 -0.6 431,973 + yajI b0412 0.81 -1.3 432,007 + yajI b0412 0.87 -2.0 432,007 + yajI b0412 0.87 -1.0 432,017 - yajI b0412 0.89 -0.2 432,056 - +0.1 432,071 + +0.3 432,071 + -1.2 432,078 - +1.5 432,105 + +0.1 432,105 + -0.4 432,115 + -0.2 432,207 - -1.0 432,663 + +0.2 432,669 + +0.6 432,690 + +0.2
Or see this region's nucleotide sequence