Strain Fitness in Agrobacterium fabrum C58 around Atu6036

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6035 and Atu6036 overlap by 7 nucleotidesAtu6036 and Atu6037 overlap by 4 nucleotidesAtu6037 and Atu6038 overlap by 29 nucleotides Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120 Atu6035 Atu6036: Atu6036 - entry-exclusion protein, at 46,114 to 46,332 Atu6036 Atu6037: Atu6037 - conjugal transfer protein, at 46,329 to 47,132 Atu6037 Atu6038: Atu6038 - conjugal transfer protein, at 47,104 to 49,572 Atu6038 Position (kb) 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 45.123 kb on + strand, within Atu6035at 45.143 kb on - strand, within Atu6035at 45.148 kb on - strand, within Atu6035at 45.235 kb on - strand, within Atu6035at 45.250 kb on + strand, within Atu6035at 45.258 kb on - strand, within Atu6035at 45.268 kb on - strand, within Atu6035at 45.358 kb on - strand, within Atu6035at 45.370 kb on + strand, within Atu6035at 45.413 kb on + strand, within Atu6035at 45.446 kb on + strand, within Atu6035at 45.451 kb on + strand, within Atu6035at 45.479 kb on - strand, within Atu6035at 45.488 kb on - strand, within Atu6035at 45.504 kb on + strand, within Atu6035at 45.523 kb on + strand, within Atu6035at 45.536 kb on - strand, within Atu6035at 45.615 kb on + strand, within Atu6035at 45.769 kb on + strand, within Atu6035at 45.779 kb on - strand, within Atu6035at 45.964 kb on - strand, within Atu6035at 46.013 kb on + strandat 46.013 kb on + strandat 46.013 kb on + strandat 46.013 kb on + strandat 46.021 kb on - strandat 46.021 kb on - strandat 46.021 kb on - strandat 46.021 kb on - strandat 46.026 kb on - strandat 46.026 kb on - strandat 46.050 kb on + strandat 46.058 kb on - strandat 46.066 kb on - strandat 46.068 kb on - strandat 46.090 kb on - strandat 46.114 kb on + strandat 46.190 kb on - strand, within Atu6036at 46.209 kb on + strand, within Atu6036at 46.338 kb on - strandat 46.338 kb on - strandat 46.338 kb on - strandat 46.389 kb on - strandat 46.430 kb on - strand, within Atu6037at 46.440 kb on - strand, within Atu6037at 46.440 kb on - strand, within Atu6037at 46.492 kb on - strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.560 kb on + strand, within Atu6037at 46.562 kb on + strand, within Atu6037at 46.570 kb on - strand, within Atu6037at 46.570 kb on - strand, within Atu6037at 46.582 kb on + strand, within Atu6037at 46.664 kb on + strand, within Atu6037at 46.682 kb on - strand, within Atu6037at 46.773 kb on - strand, within Atu6037at 46.809 kb on + strand, within Atu6037at 46.826 kb on + strand, within Atu6037at 46.831 kb on + strand, within Atu6037at 46.843 kb on + strand, within Atu6037at 46.843 kb on + strand, within Atu6037at 46.870 kb on + strand, within Atu6037at 46.916 kb on + strand, within Atu6037at 46.928 kb on + strand, within Atu6037at 46.988 kb on + strand, within Atu6037at 47.009 kb on + strand, within Atu6037at 47.066 kb on + strandat 47.074 kb on - strandat 47.074 kb on - strandat 47.077 kb on + strandat 47.082 kb on + strandat 47.085 kb on - strandat 47.090 kb on - strandat 47.160 kb on + strandat 47.204 kb on + strandat 47.214 kb on - strandat 47.214 kb on - strandat 47.282 kb on - strandat 47.304 kb on - strandat 47.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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45,123 + Atu6035 0.17 -0.0
45,143 - Atu6035 0.18 +0.1
45,148 - Atu6035 0.19 -1.5
45,235 - Atu6035 0.26 +0.4
45,250 + Atu6035 0.27 -0.3
45,258 - Atu6035 0.28 +0.1
45,268 - Atu6035 0.29 -0.8
45,358 - Atu6035 0.36 +0.1
45,370 + Atu6035 0.37 -0.5
45,413 + Atu6035 0.41 -0.7
45,446 + Atu6035 0.44 -0.4
45,451 + Atu6035 0.44 -0.3
45,479 - Atu6035 0.46 -0.5
45,488 - Atu6035 0.47 +0.0
45,504 + Atu6035 0.48 -0.6
45,523 + Atu6035 0.50 -0.5
45,536 - Atu6035 0.51 +0.1
45,615 + Atu6035 0.58 -0.9
45,769 + Atu6035 0.71 +0.1
45,779 - Atu6035 0.71 +1.3
45,964 - Atu6035 0.87 -1.7
46,013 + -0.1
46,013 + -1.4
46,013 + -0.6
46,013 + -0.8
46,021 - -0.1
46,021 - +0.7
46,021 - +1.0
46,021 - -0.6
46,026 - -0.3
46,026 - +0.1
46,050 + +0.1
46,058 - -0.3
46,066 - -1.0
46,068 - +0.3
46,090 - -0.2
46,114 + +1.0
46,190 - Atu6036 0.35 +1.1
46,209 + Atu6036 0.43 +0.3
46,338 - -1.1
46,338 - -0.1
46,338 - +0.2
46,389 - -0.7
46,430 - Atu6037 0.13 -0.9
46,440 - Atu6037 0.14 +0.0
46,440 - Atu6037 0.14 +0.1
46,492 - Atu6037 0.20 -0.3
46,537 + Atu6037 0.26 -0.5
46,537 + Atu6037 0.26 -0.5
46,537 + Atu6037 0.26 -0.3
46,545 - Atu6037 0.27 -0.2
46,545 - Atu6037 0.27 +1.8
46,545 - Atu6037 0.27 -0.3
46,545 - Atu6037 0.27 -0.9
46,545 - Atu6037 0.27 -0.4
46,545 - Atu6037 0.27 +0.5
46,560 + Atu6037 0.29 -0.5
46,562 + Atu6037 0.29 -0.4
46,570 - Atu6037 0.30 +0.5
46,570 - Atu6037 0.30 +1.0
46,582 + Atu6037 0.31 +2.1
46,664 + Atu6037 0.42 +0.1
46,682 - Atu6037 0.44 -0.6
46,773 - Atu6037 0.55 +0.0
46,809 + Atu6037 0.60 +0.0
46,826 + Atu6037 0.62 -0.3
46,831 + Atu6037 0.62 -2.3
46,843 + Atu6037 0.64 -0.2
46,843 + Atu6037 0.64 -0.3
46,870 + Atu6037 0.67 -0.8
46,916 + Atu6037 0.73 -0.6
46,928 + Atu6037 0.75 -0.6
46,988 + Atu6037 0.82 -0.5
47,009 + Atu6037 0.85 +0.0
47,066 + +0.2
47,074 - +0.2
47,074 - -0.7
47,077 + -0.2
47,082 + +0.3
47,085 - +0.1
47,090 - -0.4
47,160 + +0.5
47,204 + -0.1
47,214 - -0.2
47,214 - -1.9
47,282 - -0.2
47,304 - +0.1
47,322 + +0.7

Or see this region's nucleotide sequence