Strain Fitness in Agrobacterium fabrum C58 around Atu5482

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5480 and Atu5481 overlap by 4 nucleotidesAtu5481 and Atu5482 are separated by 33 nucleotidesAtu5482 and Atu5483 are separated by 207 nucleotides Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079 Atu5480 Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804 Atu5481 Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647 Atu5482 Atu5483: Atu5483 - GntR family transcriptional regulator, at 474,855 to 475,853 Atu5483 Position (kb) 473 474 475Strain fitness (log2 ratio) -1 0 1 2at 472.896 kb on + strand, within Atu5480at 472.904 kb on - strand, within Atu5480at 472.913 kb on + strand, within Atu5480at 472.946 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 473.121 kb on + strandat 473.178 kb on - strand, within Atu5481at 473.243 kb on - strand, within Atu5481at 473.398 kb on + strand, within Atu5481at 473.398 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.474 kb on + strand, within Atu5481at 473.500 kb on - strand, within Atu5481at 473.512 kb on + strand, within Atu5481at 473.603 kb on + strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.688 kb on + strand, within Atu5481at 473.736 kb on - strandat 473.752 kb on - strandat 473.756 kb on + strandat 473.781 kb on + strandat 473.844 kb on - strandat 473.964 kb on - strand, within Atu5482at 474.014 kb on + strand, within Atu5482at 474.018 kb on - strand, within Atu5482at 474.026 kb on + strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.039 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.084 kb on + strand, within Atu5482at 474.096 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.135 kb on - strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.159 kb on - strand, within Atu5482at 474.160 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.268 kb on + strand, within Atu5482at 474.394 kb on + strand, within Atu5482at 474.411 kb on - strand, within Atu5482at 474.413 kb on - strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.463 kb on - strand, within Atu5482at 474.547 kb on - strand, within Atu5482at 474.568 kb on + strandat 474.586 kb on - strandat 474.663 kb on - strandat 474.672 kb on + strandat 474.832 kb on + strandat 475.039 kb on + strand, within Atu5483at 475.056 kb on + strand, within Atu5483at 475.066 kb on + strand, within Atu5483at 475.080 kb on - strand, within Atu5483at 475.098 kb on - strand, within Atu5483at 475.104 kb on + strand, within Atu5483at 475.112 kb on - strand, within Atu5483at 475.180 kb on + strand, within Atu5483at 475.289 kb on + strand, within Atu5483at 475.352 kb on + strand, within Atu5483at 475.367 kb on + strand, within Atu5483at 475.455 kb on + strand, within Atu5483at 475.456 kb on + strand, within Atu5483at 475.456 kb on - strand, within Atu5483at 475.494 kb on - strand, within Atu5483

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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472,896 + Atu5480 0.76 -0.8
472,904 - Atu5480 0.77 -1.5
472,913 + Atu5480 0.78 +0.0
472,946 - Atu5480 0.82 -0.1
472,979 - Atu5480 0.87 +0.1
472,979 - Atu5480 0.87 -0.3
473,121 + -0.4
473,178 - Atu5481 0.14 +1.0
473,243 - Atu5481 0.23 +0.4
473,398 + Atu5481 0.44 +1.8
473,398 - Atu5481 0.44 +0.0
473,406 - Atu5481 0.45 -0.4
473,406 - Atu5481 0.45 -0.4
473,474 + Atu5481 0.55 +0.8
473,500 - Atu5481 0.58 +0.1
473,512 + Atu5481 0.60 +0.0
473,603 + Atu5481 0.72 +0.0
473,611 - Atu5481 0.73 +1.2
473,611 - Atu5481 0.73 +0.5
473,688 + Atu5481 0.84 +0.3
473,736 - +0.1
473,752 - -1.0
473,756 + +0.4
473,781 + -0.7
473,844 - +0.8
473,964 - Atu5482 0.16 -0.1
474,014 + Atu5482 0.22 -0.8
474,018 - Atu5482 0.22 -0.5
474,026 + Atu5482 0.23 -1.0
474,034 - Atu5482 0.24 -0.0
474,034 - Atu5482 0.24 -0.7
474,034 - Atu5482 0.24 +0.0
474,034 - Atu5482 0.24 -1.1
474,036 + Atu5482 0.24 +2.2
474,036 + Atu5482 0.24 -0.2
474,036 + Atu5482 0.24 -0.8
474,039 - Atu5482 0.25 -0.9
474,044 - Atu5482 0.25 -0.1
474,044 - Atu5482 0.25 +0.7
474,084 + Atu5482 0.30 -0.2
474,096 + Atu5482 0.32 -0.5
474,108 + Atu5482 0.33 -0.0
474,108 + Atu5482 0.33 -1.7
474,108 + Atu5482 0.33 -0.2
474,108 + Atu5482 0.33 +0.1
474,108 + Atu5482 0.33 -0.5
474,108 + Atu5482 0.33 -0.4
474,116 - Atu5482 0.34 -0.5
474,116 - Atu5482 0.34 -0.6
474,116 - Atu5482 0.34 -0.1
474,135 - Atu5482 0.37 +0.2
474,157 + Atu5482 0.39 +0.6
474,157 + Atu5482 0.39 -0.7
474,157 + Atu5482 0.39 -0.2
474,159 - Atu5482 0.40 -0.1
474,160 - Atu5482 0.40 -0.3
474,165 - Atu5482 0.40 -1.3
474,165 - Atu5482 0.40 -0.2
474,268 + Atu5482 0.53 -0.5
474,394 + Atu5482 0.69 -0.2
474,411 - Atu5482 0.71 -1.4
474,413 - Atu5482 0.71 -0.4
474,436 + Atu5482 0.74 -0.5
474,436 + Atu5482 0.74 -0.5
474,463 - Atu5482 0.77 +0.1
474,547 - Atu5482 0.88 -0.6
474,568 + +0.3
474,586 - +0.3
474,663 - +0.0
474,672 + -0.9
474,832 + -0.1
475,039 + Atu5483 0.18 -1.2
475,056 + Atu5483 0.20 -0.2
475,066 + Atu5483 0.21 +0.0
475,080 - Atu5483 0.23 +0.5
475,098 - Atu5483 0.24 -0.0
475,104 + Atu5483 0.25 -1.5
475,112 - Atu5483 0.26 +1.2
475,180 + Atu5483 0.33 -0.2
475,289 + Atu5483 0.43 -1.0
475,352 + Atu5483 0.50 -1.5
475,367 + Atu5483 0.51 -0.2
475,455 + Atu5483 0.60 -0.7
475,456 + Atu5483 0.60 -0.3
475,456 - Atu5483 0.60 -0.3
475,494 - Atu5483 0.64 +0.1

Or see this region's nucleotide sequence