Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5418 and Atu5419 are separated by 386 nucleotides
Atu5418: Atu5418 - opine/octopine dehydrogenase, at 412,276 to 413,358
Atu5418
Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725
Atu5419
Position (kb)
412
413
414 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 411.350 kb on - strand at 411.352 kb on + strand at 411.375 kb on + strand at 411.448 kb on - strand at 411.484 kb on + strand at 411.498 kb on + strand at 411.520 kb on + strand at 411.521 kb on - strand at 411.525 kb on + strand at 411.525 kb on + strand at 411.573 kb on + strand at 411.581 kb on - strand at 411.581 kb on - strand at 411.590 kb on + strand at 411.605 kb on + strand at 411.691 kb on + strand at 411.720 kb on + strand at 411.720 kb on + strand at 411.746 kb on + strand at 411.876 kb on - strand at 411.884 kb on + strand at 411.894 kb on + strand at 411.906 kb on + strand at 411.946 kb on + strand at 411.954 kb on - strand at 411.954 kb on - strand at 411.984 kb on - strand at 412.009 kb on + strand at 412.046 kb on + strand at 412.054 kb on - strand at 412.105 kb on - strand at 412.224 kb on - strand at 412.226 kb on + strand at 412.236 kb on + strand at 412.244 kb on - strand at 412.262 kb on + strand at 412.265 kb on - strand at 412.470 kb on + strand, within Atu5418 at 412.492 kb on + strand, within Atu5418 at 412.518 kb on + strand, within Atu5418 at 412.518 kb on + strand, within Atu5418 at 412.535 kb on + strand, within Atu5418 at 412.545 kb on + strand, within Atu5418 at 412.573 kb on + strand, within Atu5418 at 412.573 kb on + strand, within Atu5418 at 412.581 kb on - strand, within Atu5418 at 412.584 kb on + strand, within Atu5418 at 412.592 kb on - strand, within Atu5418 at 412.606 kb on - strand, within Atu5418 at 412.637 kb on - strand, within Atu5418 at 412.637 kb on - strand, within Atu5418 at 412.661 kb on + strand, within Atu5418 at 412.713 kb on + strand, within Atu5418 at 412.713 kb on + strand, within Atu5418 at 412.721 kb on - strand, within Atu5418 at 412.722 kb on + strand, within Atu5418 at 412.850 kb on - strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.855 kb on + strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.863 kb on - strand, within Atu5418 at 412.863 kb on - strand, within Atu5418 at 412.864 kb on + strand, within Atu5418 at 412.872 kb on - strand, within Atu5418 at 412.931 kb on - strand, within Atu5418 at 413.034 kb on + strand, within Atu5418 at 413.065 kb on + strand, within Atu5418 at 413.140 kb on - strand, within Atu5418 at 413.166 kb on + strand, within Atu5418 at 413.166 kb on + strand, within Atu5418 at 413.290 kb on - strand at 413.395 kb on - strand at 413.404 kb on + strand at 413.412 kb on - strand at 413.495 kb on - strand at 413.502 kb on + strand at 413.537 kb on + strand at 413.537 kb on + strand at 413.537 kb on + strand at 413.540 kb on - strand at 413.543 kb on + strand at 413.545 kb on - strand at 413.553 kb on + strand at 413.617 kb on - strand at 413.767 kb on + strand at 413.807 kb on + strand at 413.832 kb on - strand at 413.918 kb on + strand, within Atu5419 at 413.992 kb on + strand, within Atu5419 at 413.993 kb on - strand, within Atu5419 at 414.010 kb on + strand, within Atu5419 at 414.010 kb on + strand, within Atu5419 at 414.014 kb on + strand, within Atu5419 at 414.072 kb on - strand, within Atu5419 at 414.087 kb on - strand, within Atu5419 at 414.093 kb on + strand, within Atu5419 at 414.149 kb on + strand, within Atu5419 at 414.159 kb on + strand, within Atu5419 at 414.172 kb on + strand, within Atu5419 at 414.180 kb on - strand, within Atu5419 at 414.230 kb on - strand, within Atu5419 at 414.252 kb on + strand, within Atu5419
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 411,350 - -1.3 411,352 + -1.3 411,375 + +0.5 411,448 - +1.3 411,484 + -0.0 411,498 + -1.2 411,520 + -0.5 411,521 - -0.3 411,525 + -0.6 411,525 + -0.1 411,573 + -0.1 411,581 - +0.5 411,581 - -0.3 411,590 + -0.4 411,605 + -0.7 411,691 + +0.3 411,720 + +0.1 411,720 + +0.1 411,746 + -0.5 411,876 - -0.3 411,884 + -1.0 411,894 + +0.3 411,906 + -1.1 411,946 + -0.3 411,954 - -0.2 411,954 - -0.2 411,984 - -0.1 412,009 + -0.1 412,046 + +0.4 412,054 - -0.6 412,105 - -0.4 412,224 - -0.1 412,226 + -0.1 412,236 + +0.5 412,244 - +0.3 412,262 + +0.0 412,265 - -0.4 412,470 + Atu5418 0.18 +0.1 412,492 + Atu5418 0.20 +1.3 412,518 + Atu5418 0.22 +0.0 412,518 + Atu5418 0.22 +0.5 412,535 + Atu5418 0.24 -0.2 412,545 + Atu5418 0.25 +0.3 412,573 + Atu5418 0.27 -0.3 412,573 + Atu5418 0.27 -0.4 412,581 - Atu5418 0.28 -0.3 412,584 + Atu5418 0.28 -0.2 412,592 - Atu5418 0.29 -1.1 412,606 - Atu5418 0.30 -0.3 412,637 - Atu5418 0.33 -0.6 412,637 - Atu5418 0.33 -0.3 412,661 + Atu5418 0.36 +2.5 412,713 + Atu5418 0.40 -0.1 412,713 + Atu5418 0.40 -0.4 412,721 - Atu5418 0.41 +0.1 412,722 + Atu5418 0.41 -0.3 412,850 - Atu5418 0.53 -0.4 412,854 + Atu5418 0.53 -0.4 412,854 + Atu5418 0.53 -0.4 412,854 + Atu5418 0.53 -0.5 412,854 + Atu5418 0.53 -1.1 412,854 + Atu5418 0.53 -0.5 412,854 + Atu5418 0.53 +0.2 412,854 + Atu5418 0.53 -0.2 412,854 + Atu5418 0.53 +0.0 412,854 + Atu5418 0.53 -1.5 412,854 + Atu5418 0.53 -0.7 412,854 + Atu5418 0.53 -2.0 412,854 + Atu5418 0.53 -0.3 412,854 + Atu5418 0.53 -0.2 412,854 + Atu5418 0.53 -1.4 412,854 + Atu5418 0.53 -0.5 412,854 + Atu5418 0.53 +0.5 412,855 + Atu5418 0.53 -1.0 412,862 - Atu5418 0.54 -0.5 412,862 - Atu5418 0.54 -0.5 412,862 - Atu5418 0.54 +0.4 412,862 - Atu5418 0.54 -0.1 412,862 - Atu5418 0.54 -0.7 412,862 - Atu5418 0.54 -0.2 412,862 - Atu5418 0.54 -0.2 412,862 - Atu5418 0.54 -0.6 412,863 - Atu5418 0.54 -0.1 412,863 - Atu5418 0.54 -0.2 412,864 + Atu5418 0.54 -0.1 412,872 - Atu5418 0.55 +0.1 412,931 - Atu5418 0.60 -0.4 413,034 + Atu5418 0.70 -0.2 413,065 + Atu5418 0.73 -0.1 413,140 - Atu5418 0.80 +0.3 413,166 + Atu5418 0.82 -0.5 413,166 + Atu5418 0.82 -0.5 413,290 - -0.9 413,395 - -0.6 413,404 + -0.1 413,412 - -0.4 413,495 - +0.2 413,502 + -0.5 413,537 + +0.0 413,537 + +0.7 413,537 + +0.1 413,540 - -0.5 413,543 + +0.8 413,545 - -0.9 413,553 + -0.3 413,617 - -0.1 413,767 + +0.0 413,807 + -0.6 413,832 - -1.0 413,918 + Atu5419 0.18 -0.3 413,992 + Atu5419 0.25 -0.9 413,993 - Atu5419 0.25 +0.8 414,010 + Atu5419 0.27 -1.8 414,010 + Atu5419 0.27 -2.6 414,014 + Atu5419 0.27 +0.1 414,072 - Atu5419 0.33 +1.5 414,087 - Atu5419 0.35 -0.6 414,093 + Atu5419 0.35 -1.0 414,149 + Atu5419 0.41 -0.6 414,159 + Atu5419 0.42 +0.5 414,172 + Atu5419 0.44 +0.2 414,180 - Atu5419 0.44 +0.8 414,230 - Atu5419 0.49 +0.3 414,252 + Atu5419 0.52 -0.5
Or see this region's nucleotide sequence