Strain Fitness in Agrobacterium fabrum C58 around Atu5418

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5418 and Atu5419 are separated by 386 nucleotides Atu5418: Atu5418 - opine/octopine dehydrogenase, at 412,276 to 413,358 Atu5418 Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725 Atu5419 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.350 kb on - strandat 411.352 kb on + strandat 411.375 kb on + strandat 411.448 kb on - strandat 411.484 kb on + strandat 411.498 kb on + strandat 411.520 kb on + strandat 411.521 kb on - strandat 411.525 kb on + strandat 411.525 kb on + strandat 411.573 kb on + strandat 411.581 kb on - strandat 411.581 kb on - strandat 411.590 kb on + strandat 411.605 kb on + strandat 411.691 kb on + strandat 411.720 kb on + strandat 411.720 kb on + strandat 411.746 kb on + strandat 411.876 kb on - strandat 411.884 kb on + strandat 411.894 kb on + strandat 411.906 kb on + strandat 411.946 kb on + strandat 411.954 kb on - strandat 411.954 kb on - strandat 411.984 kb on - strandat 412.009 kb on + strandat 412.046 kb on + strandat 412.054 kb on - strandat 412.105 kb on - strandat 412.224 kb on - strandat 412.226 kb on + strandat 412.236 kb on + strandat 412.244 kb on - strandat 412.262 kb on + strandat 412.265 kb on - strandat 412.470 kb on + strand, within Atu5418at 412.492 kb on + strand, within Atu5418at 412.518 kb on + strand, within Atu5418at 412.518 kb on + strand, within Atu5418at 412.535 kb on + strand, within Atu5418at 412.545 kb on + strand, within Atu5418at 412.573 kb on + strand, within Atu5418at 412.573 kb on + strand, within Atu5418at 412.581 kb on - strand, within Atu5418at 412.584 kb on + strand, within Atu5418at 412.592 kb on - strand, within Atu5418at 412.606 kb on - strand, within Atu5418at 412.637 kb on - strand, within Atu5418at 412.637 kb on - strand, within Atu5418at 412.661 kb on + strand, within Atu5418at 412.713 kb on + strand, within Atu5418at 412.713 kb on + strand, within Atu5418at 412.721 kb on - strand, within Atu5418at 412.722 kb on + strand, within Atu5418at 412.850 kb on - strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.854 kb on + strand, within Atu5418at 412.855 kb on + strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.862 kb on - strand, within Atu5418at 412.863 kb on - strand, within Atu5418at 412.863 kb on - strand, within Atu5418at 412.864 kb on + strand, within Atu5418at 412.872 kb on - strand, within Atu5418at 412.931 kb on - strand, within Atu5418at 413.034 kb on + strand, within Atu5418at 413.065 kb on + strand, within Atu5418at 413.140 kb on - strand, within Atu5418at 413.166 kb on + strand, within Atu5418at 413.166 kb on + strand, within Atu5418at 413.290 kb on - strandat 413.395 kb on - strandat 413.404 kb on + strandat 413.412 kb on - strandat 413.495 kb on - strandat 413.502 kb on + strandat 413.537 kb on + strandat 413.537 kb on + strandat 413.537 kb on + strandat 413.540 kb on - strandat 413.543 kb on + strandat 413.545 kb on - strandat 413.553 kb on + strandat 413.617 kb on - strandat 413.767 kb on + strandat 413.807 kb on + strandat 413.832 kb on - strandat 413.918 kb on + strand, within Atu5419at 413.992 kb on + strand, within Atu5419at 413.993 kb on - strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.010 kb on + strand, within Atu5419at 414.014 kb on + strand, within Atu5419at 414.072 kb on - strand, within Atu5419at 414.087 kb on - strand, within Atu5419at 414.093 kb on + strand, within Atu5419at 414.149 kb on + strand, within Atu5419at 414.159 kb on + strand, within Atu5419at 414.172 kb on + strand, within Atu5419at 414.180 kb on - strand, within Atu5419at 414.230 kb on - strand, within Atu5419at 414.252 kb on + strand, within Atu5419

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
remove
411,350 - -1.3
411,352 + -1.3
411,375 + +0.5
411,448 - +1.3
411,484 + -0.0
411,498 + -1.2
411,520 + -0.5
411,521 - -0.3
411,525 + -0.6
411,525 + -0.1
411,573 + -0.1
411,581 - +0.5
411,581 - -0.3
411,590 + -0.4
411,605 + -0.7
411,691 + +0.3
411,720 + +0.1
411,720 + +0.1
411,746 + -0.5
411,876 - -0.3
411,884 + -1.0
411,894 + +0.3
411,906 + -1.1
411,946 + -0.3
411,954 - -0.2
411,954 - -0.2
411,984 - -0.1
412,009 + -0.1
412,046 + +0.4
412,054 - -0.6
412,105 - -0.4
412,224 - -0.1
412,226 + -0.1
412,236 + +0.5
412,244 - +0.3
412,262 + +0.0
412,265 - -0.4
412,470 + Atu5418 0.18 +0.1
412,492 + Atu5418 0.20 +1.3
412,518 + Atu5418 0.22 +0.0
412,518 + Atu5418 0.22 +0.5
412,535 + Atu5418 0.24 -0.2
412,545 + Atu5418 0.25 +0.3
412,573 + Atu5418 0.27 -0.3
412,573 + Atu5418 0.27 -0.4
412,581 - Atu5418 0.28 -0.3
412,584 + Atu5418 0.28 -0.2
412,592 - Atu5418 0.29 -1.1
412,606 - Atu5418 0.30 -0.3
412,637 - Atu5418 0.33 -0.6
412,637 - Atu5418 0.33 -0.3
412,661 + Atu5418 0.36 +2.5
412,713 + Atu5418 0.40 -0.1
412,713 + Atu5418 0.40 -0.4
412,721 - Atu5418 0.41 +0.1
412,722 + Atu5418 0.41 -0.3
412,850 - Atu5418 0.53 -0.4
412,854 + Atu5418 0.53 -0.4
412,854 + Atu5418 0.53 -0.4
412,854 + Atu5418 0.53 -0.5
412,854 + Atu5418 0.53 -1.1
412,854 + Atu5418 0.53 -0.5
412,854 + Atu5418 0.53 +0.2
412,854 + Atu5418 0.53 -0.2
412,854 + Atu5418 0.53 +0.0
412,854 + Atu5418 0.53 -1.5
412,854 + Atu5418 0.53 -0.7
412,854 + Atu5418 0.53 -2.0
412,854 + Atu5418 0.53 -0.3
412,854 + Atu5418 0.53 -0.2
412,854 + Atu5418 0.53 -1.4
412,854 + Atu5418 0.53 -0.5
412,854 + Atu5418 0.53 +0.5
412,855 + Atu5418 0.53 -1.0
412,862 - Atu5418 0.54 -0.5
412,862 - Atu5418 0.54 -0.5
412,862 - Atu5418 0.54 +0.4
412,862 - Atu5418 0.54 -0.1
412,862 - Atu5418 0.54 -0.7
412,862 - Atu5418 0.54 -0.2
412,862 - Atu5418 0.54 -0.2
412,862 - Atu5418 0.54 -0.6
412,863 - Atu5418 0.54 -0.1
412,863 - Atu5418 0.54 -0.2
412,864 + Atu5418 0.54 -0.1
412,872 - Atu5418 0.55 +0.1
412,931 - Atu5418 0.60 -0.4
413,034 + Atu5418 0.70 -0.2
413,065 + Atu5418 0.73 -0.1
413,140 - Atu5418 0.80 +0.3
413,166 + Atu5418 0.82 -0.5
413,166 + Atu5418 0.82 -0.5
413,290 - -0.9
413,395 - -0.6
413,404 + -0.1
413,412 - -0.4
413,495 - +0.2
413,502 + -0.5
413,537 + +0.0
413,537 + +0.7
413,537 + +0.1
413,540 - -0.5
413,543 + +0.8
413,545 - -0.9
413,553 + -0.3
413,617 - -0.1
413,767 + +0.0
413,807 + -0.6
413,832 - -1.0
413,918 + Atu5419 0.18 -0.3
413,992 + Atu5419 0.25 -0.9
413,993 - Atu5419 0.25 +0.8
414,010 + Atu5419 0.27 -1.8
414,010 + Atu5419 0.27 -2.6
414,014 + Atu5419 0.27 +0.1
414,072 - Atu5419 0.33 +1.5
414,087 - Atu5419 0.35 -0.6
414,093 + Atu5419 0.35 -1.0
414,149 + Atu5419 0.41 -0.6
414,159 + Atu5419 0.42 +0.5
414,172 + Atu5419 0.44 +0.2
414,180 - Atu5419 0.44 +0.8
414,230 - Atu5419 0.49 +0.3
414,252 + Atu5419 0.52 -0.5

Or see this region's nucleotide sequence