Strain Fitness in Agrobacterium fabrum C58 around Atu5060

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
58,164	+				-0.3
58,170	-				-1.3
58,170	-				+0.3
58,180	-				+0.6
58,240	+				-0.1
58,240	+				-0.0
58,248	-				+0.3
58,248	-				-0.8
58,287	+				+0.0
58,287	+				+0.5
58,287	+				+0.8
58,288	-				+0.4
58,288	-				+0.8
58,395	+		Atu5059	0.14	-1.6
58,441	+		Atu5059	0.20	+3.5
58,441	+		Atu5059	0.20	-0.2
58,449	-		Atu5059	0.21	-0.1
58,474	-		Atu5059	0.24	+0.1
58,485	+		Atu5059	0.25	+1.5
58,486	-		Atu5059	0.25	-0.1
58,490	+		Atu5059	0.25	+0.2
58,492	-		Atu5059	0.26	+0.6
58,493	-		Atu5059	0.26	-0.7
58,507	-		Atu5059	0.27	+1.0
58,510	+		Atu5059	0.28	+0.5
58,518	-		Atu5059	0.29	-0.9
58,528	-		Atu5059	0.30	-0.6
58,554	-		Atu5059	0.33	+0.5
58,605	-		Atu5059	0.39	+0.9
58,620	-		Atu5059	0.40	+0.5
58,625	+		Atu5059	0.41	+1.1
58,644	+		Atu5059	0.43	-0.1
58,644	+		Atu5059	0.43	+0.3
58,644	+		Atu5059	0.43	-1.1
58,675	+		Atu5059	0.47	-0.4
58,675	+		Atu5059	0.47	+0.1
58,683	-		Atu5059	0.48	-0.3
58,685	+		Atu5059	0.48	-0.6
58,685	+		Atu5059	0.48	+0.4
58,693	-		Atu5059	0.49	-0.3
58,693	-		Atu5059	0.49	+0.7
58,709	-		Atu5059	0.51	-0.5
58,728	+		Atu5059	0.53	-1.4
58,728	+		Atu5059	0.53	+0.6
58,728	+		Atu5059	0.53	+0.7
58,755	-		Atu5059	0.56	-0.7
58,781	-		Atu5059	0.59	+0.8
58,874	+		Atu5059	0.70	+0.1
59,011	-		Atu5059	0.85	-0.6
59,044	+		Atu5059	0.89	+1.1
59,044	+		Atu5059	0.89	+1.5
59,179	+				-0.2
59,196	+				-0.2
59,196	+				-1.5
59,199	-				+1.1
59,204	-				-0.3
59,235	+		Atu5060	0.13	+0.6
59,248	-		Atu5060	0.15	+0.3
59,268	-		Atu5060	0.17	+1.5
59,282	+		Atu5060	0.19	+0.1
59,300	-		Atu5060	0.21	+0.2
59,311	+		Atu5060	0.23	+0.2
59,319	-		Atu5060	0.24	+0.9
59,319	-		Atu5060	0.24	+0.0
59,336	-		Atu5060	0.26	+0.2
59,354	+		Atu5060	0.28	+0.2
59,360	-		Atu5060	0.29	-0.3
59,361	-		Atu5060	0.29	+1.5
59,362	-		Atu5060	0.29	-0.1
59,385	-		Atu5060	0.32	-0.1
59,385	-		Atu5060	0.32	+0.1
59,402	-		Atu5060	0.34	-0.7
59,415	+		Atu5060	0.35	+2.5
59,457	-		Atu5060	0.41	+0.4
59,490	+		Atu5060	0.45	+0.4
59,521	-		Atu5060	0.49	+1.2
59,534	-		Atu5060	0.50	+0.2
59,534	-		Atu5060	0.50	+0.5
59,566	-		Atu5060	0.54	+0.7
59,596	-		Atu5060	0.58	+0.1
59,649	-		Atu5060	0.64	+0.8
59,760	+		Atu5060	0.78	+0.7
59,766	-		Atu5060	0.79	-0.5
59,818	-		Atu5060	0.85	+0.1
59,843	-		Atu5060	0.88	-1.4
59,879	+				+0.9
59,883	+				+0.0
59,912	+				-0.3
59,914	+				+0.0
59,974	-				-0.1
60,132	-		Atu5061	0.24	+0.5
60,133	-		Atu5061	0.24	-0.4
60,133	-		Atu5061	0.24	-0.4
60,399	-		Atu5061	0.59	+0.3
60,427	+		Atu5061	0.63	-0.5
60,541	-		Atu5061	0.78	+0.4
60,560	+		Atu5061	0.81	+1.0
60,584	+		Atu5061	0.84	-0.4
60,592	-		Atu5061	0.85	-0.1
60,746	+				+0.1
60,746	+				+0.2
60,746	+				+0.8
60,754	-				-0.1
60,756	+				-1.1
60,756	+				-0.5
60,756	+				-1.3
60,853	+		Atu5062	0.15	+0.8
60,854	+		Atu5062	0.15	-0.1
60,878	-		Atu5062	0.17	+0.7
60,889	+		Atu5062	0.18	-0.3
60,897	-		Atu5062	0.19	+1.0