Strain Fitness in Agrobacterium fabrum C58 around Atu4894

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,070,179	-				+1.5
2,070,344	+		Atu4893	0.25	+2.3
2,070,350	-		Atu4893	0.26	+1.9
2,070,352	-		Atu4893	0.26	+2.2
2,070,352	-		Atu4893	0.26	+2.0
2,070,536	+		Atu4893	0.52	+2.2
2,070,544	+		Atu4893	0.53	+2.2
2,070,554	+		Atu4893	0.55	+1.3
2,070,562	-		Atu4893	0.56	+2.0
2,070,562	-		Atu4893	0.56	+2.3
2,070,649	+		Atu4893	0.68	+1.6
2,070,651	+		Atu4893	0.68	+2.1
2,070,901	+				+2.3
2,070,910	-				+2.2
2,070,975	+				+1.9
2,071,064	+				+1.4
2,071,064	+				+2.1
2,071,139	-				+2.3
2,071,143	+				+1.7
2,071,175	+				+2.2
2,071,181	-				+2.1
2,071,183	-				+1.5
2,071,254	+				+1.7
2,071,267	-				+1.4
2,071,303	-				+2.1
2,071,303	-				+1.5
2,071,304	+				+2.1
2,071,312	-				+1.9
2,071,334	-		Atu4894	0.11	+1.7
2,071,388	-		Atu4894	0.15	+2.3
2,071,494	+		Atu4894	0.22	+2.6
2,071,544	-		Atu4894	0.25	+1.9
2,071,660	-		Atu4894	0.33	+2.5
2,071,671	-		Atu4894	0.34	+1.8
2,071,699	-		Atu4894	0.36	+1.9
2,071,815	+		Atu4894	0.43	+1.8
2,071,832	-		Atu4894	0.45	+2.1
2,071,882	+		Atu4894	0.48	+1.6
2,071,890	-		Atu4894	0.48	+1.6
2,071,890	-		Atu4894	0.48	+3.1
2,072,075	+		Atu4894	0.61	+2.2
2,072,112	+		Atu4894	0.63	+2.2
2,072,214	+		Atu4894	0.70	+2.1
2,072,222	-		Atu4894	0.71	+2.1
2,072,311	+		Atu4894	0.76	+2.5
2,072,311	+		Atu4894	0.76	+2.6
2,072,319	-		Atu4894	0.77	+2.2
2,072,358	+		Atu4894	0.80	+2.6
2,072,443	+		Atu4894	0.85	+1.8
2,072,498	-		Atu4894	0.89	+1.2
2,072,501	-		Atu4894	0.89	+2.2
2,072,599	-				+2.5
2,072,661	-				+3.2
2,072,727	+				+2.6
2,072,794	-				+3.0
2,072,794	-				+3.7
2,072,794	-				+1.6
2,072,806	+				+1.6
2,072,806	+				+2.1
2,072,806	+				+3.6
2,072,806	+				+1.6
2,072,806	+				-0.1
2,072,806	+				+2.6
2,072,814	-				+2.8
2,072,926	-				+1.9
2,072,950	+				+2.2
2,072,951	+				+2.9
2,073,042	+				+2.4
2,073,042	+				+2.3
2,073,042	+				+2.3
2,073,050	-				+1.8
2,073,050	-				+1.7
2,073,233	-		Atu4895	0.43	+2.7