Strain Fitness in Agrobacterium fabrum C58 around Atu4868

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,051,051	-				+1.0
2,051,121	+		Atu4866	0.13	+0.6
2,051,252	-		Atu4866	0.68	+0.8
2,051,279	-		Atu4866	0.79	+0.7
2,051,302	-		Atu4866	0.89	+0.4
2,051,355	-				-0.2
2,051,454	+				+0.7
2,051,522	+				+0.6
2,051,550	+		Atu4867	0.15	-0.0
2,051,665	-		Atu4867	0.36	+0.6
2,051,668	+		Atu4867	0.37	+0.8
2,051,668	+		Atu4867	0.37	+0.8
2,051,668	+		Atu4867	0.37	+0.6
2,051,681	-		Atu4867	0.39	+0.5
2,051,686	-		Atu4867	0.40	+0.5
2,051,692	+		Atu4867	0.41	+0.6
2,051,718	-		Atu4867	0.46	+1.4
2,051,766	+		Atu4867	0.55	+0.4
2,051,774	-		Atu4867	0.57	+0.8
2,051,828	-		Atu4867	0.67	+1.2
2,051,863	-		Atu4867	0.73	+0.3
2,051,926	-		Atu4867	0.85	+1.0
2,051,955	-				+0.9
2,051,986	+				+0.5
2,052,020	+				+0.6
2,052,178	+		Atu4868	0.16	+0.8
2,052,178	+		Atu4868	0.16	+0.7
2,052,178	+		Atu4868	0.16	+1.1
2,052,178	+		Atu4868	0.16	-0.3
2,052,186	-		Atu4868	0.16	+0.8
2,052,186	-		Atu4868	0.16	+0.2
2,052,186	-		Atu4868	0.16	+0.8
2,052,186	-		Atu4868	0.16	+0.8
2,052,186	-		Atu4868	0.16	+0.6
2,052,219	+		Atu4868	0.19	+0.5
2,052,224	-		Atu4868	0.20	+0.4
2,052,237	-		Atu4868	0.21	+0.5
2,052,309	-		Atu4868	0.28	+0.4
2,052,309	-		Atu4868	0.28	+1.5
2,052,346	-		Atu4868	0.31	+0.6
2,052,378	+		Atu4868	0.34	+0.6
2,052,425	+		Atu4868	0.39	+1.6
2,052,425	+		Atu4868	0.39	+1.8
2,052,433	-		Atu4868	0.39	+0.7
2,052,435	+		Atu4868	0.40	+0.9
2,052,435	+		Atu4868	0.40	+1.4
2,052,454	+		Atu4868	0.41	+0.9
2,052,462	-		Atu4868	0.42	+0.1
2,052,462	-		Atu4868	0.42	-1.2
2,052,502	+		Atu4868	0.46	+0.4
2,052,644	-		Atu4868	0.59	+0.8
2,052,653	+		Atu4868	0.60	+1.2
2,052,659	-		Atu4868	0.61	+0.6
2,052,659	-		Atu4868	0.61	+0.5
2,052,688	-		Atu4868	0.63	+0.9
2,052,703	+		Atu4868	0.65	+0.1
2,052,750	-		Atu4868	0.69	+0.5
2,052,854	-		Atu4868	0.79	+0.5
2,052,896	-		Atu4868	0.83	-0.1
2,052,930	+		Atu4868	0.86	+0.5
2,053,100	+				+0.3
2,053,100	+				+0.5
2,053,103	-				+0.8
2,053,108	-				+0.5
2,053,265	-				+0.6
2,053,267	+				+0.9
2,053,274	+				+0.9
2,053,275	-				-0.5
2,053,348	-		Atu4869	0.17	+0.6
2,053,358	-		Atu4869	0.19	+1.0
2,053,437	+		Atu4869	0.38	+1.2
2,053,445	-		Atu4869	0.40	-0.2
2,053,496	+		Atu4869	0.52	+0.9
2,053,523	-		Atu4869	0.58	+1.4
2,053,523	-		Atu4869	0.58	+1.4
2,053,581	+		Atu4869	0.72	+0.6
2,053,606	+		Atu4869	0.78	+0.8
2,053,684	-				-0.1
2,053,689	-				+0.9
2,053,866	+		Atu4870	0.16	+0.6
2,053,866	+		Atu4870	0.16	+0.3
2,053,868	+		Atu4870	0.16	+1.2
2,053,876	-		Atu4870	0.17	+1.0
2,053,886	-		Atu4870	0.18	+0.5
2,053,886	-		Atu4870	0.18	+0.2
2,053,893	+		Atu4870	0.18	+0.8
2,053,935	+		Atu4870	0.23	+0.9
2,053,942	-		Atu4870	0.24	-0.1