Strain Fitness in Agrobacterium fabrum C58 around Atu4861

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,045,747	+		Atu4860	0.57	+0.4
2,045,755	-		Atu4860	0.58	+0.9
2,045,755	-		Atu4860	0.58	+0.4
2,045,846	-		Atu4860	0.67	+0.2
2,045,900	-		Atu4860	0.73	-0.1
2,045,903	+		Atu4860	0.73	+0.6
2,045,962	+		Atu4860	0.80	+0.4
2,045,983	-		Atu4860	0.82	+0.8
2,046,047	-		Atu4860	0.89	-0.3
2,046,073	+				+0.6
2,046,081	-				+0.1
2,046,081	-				+0.4
2,046,134	+				-1.1
2,046,178	-				+0.6
2,046,254	-				+0.8
2,046,356	-				+0.5
2,046,356	-				+0.8
2,046,362	+				+0.7
2,046,370	-				+0.7
2,046,370	-				+1.3
2,046,402	+				-0.2
2,046,424	+				+0.9
2,046,425	+				+0.8
2,046,448	+				+0.7
2,046,487	-				-0.6
2,046,601	+				+0.8
2,046,646	+				+0.7
2,046,654	+				+0.4
2,046,656	+				+1.3
2,046,721	-				+0.6
2,046,763	+				+1.9
2,046,806	+		Atu4861	0.12	+0.4
2,046,809	+		Atu4861	0.12	-0.5
2,046,809	+		Atu4861	0.12	+0.5
2,046,809	+		Atu4861	0.12	-0.2
2,046,809	+		Atu4861	0.12	+0.6
2,046,817	-		Atu4861	0.13	+0.2
2,046,817	-		Atu4861	0.13	+1.5
2,046,873	+		Atu4861	0.21	+0.2
2,046,873	+		Atu4861	0.21	+0.3
2,046,881	-		Atu4861	0.22	+1.9
2,046,890	+		Atu4861	0.23	+1.0
2,046,942	-		Atu4861	0.30	-0.6
2,047,042	+		Atu4861	0.43	-0.0
2,047,047	+		Atu4861	0.43	+0.5
2,047,050	-		Atu4861	0.44	+0.1
2,047,086	-		Atu4861	0.49	+0.3
2,047,246	-		Atu4861	0.70	+1.5
2,047,248	+		Atu4861	0.70	+2.0
2,047,290	+		Atu4861	0.75	+1.1
2,047,290	+		Atu4861	0.75	+0.5
2,047,298	-		Atu4861	0.77	+0.8
2,047,320	+		Atu4861	0.79	+0.2
2,047,508	+				+0.6
2,047,508	+				+0.6
2,047,508	+				-0.1
2,047,514	+				+1.3
2,047,684	+		Atu4862	0.14	+0.5
2,047,709	+		Atu4862	0.16	+0.4
2,047,711	-		Atu4862	0.16	+0.1
2,047,793	-		Atu4862	0.21	+0.4
2,047,802	+		Atu4862	0.22	+1.6
2,047,807	+		Atu4862	0.22	-0.2
2,047,953	+		Atu4862	0.32	+0.5
2,047,961	-		Atu4862	0.33	+1.4
2,048,032	-		Atu4862	0.37	+0.5
2,048,161	+		Atu4862	0.46	+0.9
2,048,189	-		Atu4862	0.48	+0.5
2,048,197	+		Atu4862	0.48	+0.5
2,048,205	+		Atu4862	0.49	+0.3
2,048,360	-		Atu4862	0.59	+0.8
2,048,378	-		Atu4862	0.61	+0.3
2,048,427	+		Atu4862	0.64	+0.5
2,048,427	+		Atu4862	0.64	+0.2
2,048,427	+		Atu4862	0.64	+0.3
2,048,427	+		Atu4862	0.64	+0.9
2,048,427	+		Atu4862	0.64	-0.1
2,048,430	-		Atu4862	0.64	+0.4
2,048,435	-		Atu4862	0.64	+0.4
2,048,435	-		Atu4862	0.64	+0.6
2,048,435	-		Atu4862	0.64	+0.6
2,048,435	-		Atu4862	0.64	+0.6
2,048,435	-		Atu4862	0.64	+0.4
2,048,463	+		Atu4862	0.66	+0.7