Strain Fitness in Agrobacterium fabrum C58 around Atu4855

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,034,837	+		Atu4853	0.78	-0.1
2,034,887	-		Atu4853	0.86	+0.2
2,034,916	-				+0.1
2,034,938	+				+0.3
2,034,940	-				+0.7
2,034,956	+				-0.2
2,034,964	-				+0.3
2,034,964	-				+0.3
2,035,122	-				-0.5
2,035,146	-				+0.1
2,035,168	+				+0.2
2,035,171	+				+1.2
2,035,179	-				-0.5
2,035,319	-				-0.0
2,035,355	-				+0.4
2,035,528	-				+0.4
2,035,537	+				-0.7
2,035,569	+				-0.2
2,035,569	+				+0.2
2,035,632	+		Atu4854	0.24	-0.4
2,035,632	+		Atu4854	0.24	+0.0
2,035,645	-		Atu4854	0.30	-0.3
2,035,705	+		Atu4854	0.59	+1.4
2,035,713	-		Atu4854	0.63	+0.3
2,035,724	+		Atu4854	0.69	-0.1
2,035,724	+		Atu4854	0.69	-0.1
2,035,732	-		Atu4854	0.73	+0.4
2,035,772	-				-0.1
2,035,788	-				+0.1
2,035,790	-				-0.1
2,035,792	+				+0.7
2,035,813	-				+1.2
2,035,820	+				+0.2
2,035,828	-				-0.5
2,035,829	+				+0.7
2,035,862	+				+0.6
2,035,882	-				-0.2
2,035,948	-				+0.8
2,035,951	+				+0.5
2,035,961	-				+0.4
2,036,020	+				+0.8
2,036,028	-				+0.3
2,036,121	+				+1.0
2,036,146	-				-0.1
2,036,146	-				-0.5
2,036,146	-				-0.2
2,036,146	-				+0.1
2,036,224	+		Atu4855	0.11	+0.0
2,036,304	-		Atu4855	0.13	+0.8
2,036,314	-		Atu4855	0.13	+0.3
2,036,356	+		Atu4855	0.14	+0.6
2,036,408	+		Atu4855	0.16	-0.1
2,036,408	+		Atu4855	0.16	+0.4
2,036,408	+		Atu4855	0.16	-0.1
2,036,408	+		Atu4855	0.16	+0.3
2,036,408	+		Atu4855	0.16	+1.1
2,036,416	-		Atu4855	0.16	-0.6
2,036,416	-		Atu4855	0.16	+0.6
2,036,416	-		Atu4855	0.16	+0.1
2,036,500	-		Atu4855	0.18	+0.3
2,036,513	+		Atu4855	0.19	+0.2
2,036,612	+		Atu4855	0.21	+0.2
2,036,636	+		Atu4855	0.22	-0.4
2,036,680	+		Atu4855	0.23	+0.2
2,036,772	+		Atu4855	0.25	+0.3
2,036,781	-		Atu4855	0.26	+0.2
2,036,835	+		Atu4855	0.27	-0.1
2,036,835	+		Atu4855	0.27	-0.5
2,036,843	-		Atu4855	0.27	+0.4
2,036,898	-		Atu4855	0.29	+0.4
2,036,910	+		Atu4855	0.29	-0.0
2,037,076	+		Atu4855	0.33	+0.5
2,037,171	+		Atu4855	0.36	-0.0
2,037,178	-		Atu4855	0.36	+0.3
2,037,179	-		Atu4855	0.36	+0.7
2,037,183	+		Atu4855	0.36	+1.2
2,037,298	+		Atu4855	0.39	+0.4
2,037,315	-		Atu4855	0.40	-0.1
2,037,319	+		Atu4855	0.40	+0.0
2,037,324	+		Atu4855	0.40	+0.6
2,037,327	-		Atu4855	0.40	+0.6
2,037,332	-		Atu4855	0.40	+1.1
2,037,332	-		Atu4855	0.40	+0.9
2,037,332	-		Atu4855	0.40	-0.1
2,037,344	-		Atu4855	0.40	-0.2
2,037,348	+		Atu4855	0.40	+0.8
2,037,371	-		Atu4855	0.41	-0.2
2,037,382	-		Atu4855	0.41	-0.1
2,037,390	-		Atu4855	0.42	+1.3
2,037,390	-		Atu4855	0.42	+0.3
2,037,418	+		Atu4855	0.42	-0.4
2,037,464	+		Atu4855	0.44	+0.5
2,037,533	-		Atu4855	0.45	-0.1
2,037,534	+		Atu4855	0.45	-0.7
2,037,542	-		Atu4855	0.46	+0.5
2,037,543	+		Atu4855	0.46	-0.1
2,037,686	-		Atu4855	0.49	+0.3
2,037,714	+		Atu4855	0.50	-1.1
2,037,714	+		Atu4855	0.50	+0.2
2,037,731	+		Atu4855	0.51	+0.1
2,038,049	-		Atu4855	0.59	+0.2
2,038,059	+		Atu4855	0.59	-0.2
2,038,207	-		Atu4855	0.63	+0.4
2,038,237	+		Atu4855	0.64	+0.2
2,038,237	+		Atu4855	0.64	+0.1
2,038,237	+		Atu4855	0.64	+0.9
2,038,237	-		Atu4855	0.64	+0.8
2,038,245	-		Atu4855	0.64	+0.3
2,038,250	+		Atu4855	0.64	+0.4
2,038,283	+		Atu4855	0.65	-0.0
2,038,283	+		Atu4855	0.65	+0.3
2,038,298	-		Atu4855	0.65	-0.0
2,038,345	+		Atu4855	0.67	-0.1
2,038,363	+		Atu4855	0.67	+0.2
2,038,388	-		Atu4855	0.68	+0.2
2,038,426	-		Atu4855	0.69	-0.4
2,038,509	+		Atu4855	0.71	-0.4
2,038,559	+		Atu4855	0.72	+0.3
2,038,562	-		Atu4855	0.72	+0.2
2,038,567	+		Atu4855	0.73	+0.4
2,038,567	+		Atu4855	0.73	-0.5
2,038,567	+		Atu4855	0.73	-1.2
2,038,567	+		Atu4855	0.73	-0.2
2,038,575	-		Atu4855	0.73	+0.6
2,038,575	-		Atu4855	0.73	+0.8
2,038,637	+		Atu4855	0.74	+0.4
2,038,683	-		Atu4855	0.76	+0.1
2,038,714	-		Atu4855	0.76	+0.3
2,038,819	+		Atu4855	0.79	+0.8
2,038,820	-		Atu4855	0.79	+0.4
2,038,822	-		Atu4855	0.79	+0.2
2,038,882	+		Atu4855	0.81	-0.3
2,038,956	-		Atu4855	0.83	+1.1
2,038,970	+		Atu4855	0.83	+0.4
2,038,978	-		Atu4855	0.83	-1.1
2,038,978	-		Atu4855	0.83	+0.1
2,038,978	-		Atu4855	0.83	+1.1
2,038,978	-		Atu4855	0.83	+0.2
2,038,978	-		Atu4855	0.83	-0.9
2,039,021	-		Atu4855	0.85	+0.3
2,039,161	+		Atu4855	0.88	+0.6
2,039,200	-		Atu4855	0.89	+0.4
2,039,287	-				+0.1
2,039,420	-				-0.0
2,039,474	+				-0.5
2,039,492	+				+0.1
2,039,530	-				+0.2
2,039,535	-				+0.9
2,039,569	-				+0.3
2,039,627	+				+0.2
2,039,896	+				+1.1
2,039,963	+				+0.8
2,039,971	-				+0.8
2,039,978	+				+0.5
2,039,998	-				+1.7
2,039,998	-				+0.3
2,040,110	+				+0.3
2,040,110	+				+0.4
2,040,110	+				+0.7
2,040,110	+				+0.3
2,040,125	+				-0.6
2,040,200	+				+0.3
2,040,208	-				+0.2
2,040,210	+				+0.4
2,040,215	+				-0.4
2,040,215	+				-0.5
2,040,215	+				+0.0
2,040,223	-				+0.3
2,040,223	-				+0.8
2,040,223	-				+0.3
2,040,223	-				+0.1
2,040,223	-				+0.1
2,040,251	-				+1.5
2,040,251	-				-0.5
2,040,264	-				+0.5
2,040,264	-				+0.5
2,040,315	-				-0.0
2,040,344	+		Atu4856	0.11	+0.1
2,040,397	+		Atu4856	0.16	+0.4
2,040,405	-		Atu4856	0.17	-0.3
2,040,421	-		Atu4856	0.19	+0.5
2,040,490	-		Atu4856	0.26	+0.6
2,040,525	-		Atu4856	0.30	+0.1
2,040,573	-		Atu4856	0.35	+0.2
2,040,573	-		Atu4856	0.35	+0.3