Strain Fitness in Agrobacterium fabrum C58 around Atu4075

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,193,074	-		Atu4075	0.11	-1.3
1,193,206	+		Atu4075	0.20	-2.7
1,193,206	+		Atu4075	0.20	-2.6
1,193,214	-		Atu4075	0.21	-5.3
1,193,214	-		Atu4075	0.21	-0.8
1,193,421	-		Atu4075	0.35	-4.7
1,193,438	+		Atu4075	0.36	-3.7
1,193,647	-		Atu4075	0.51	-2.5
1,194,018	-		Atu4075	0.76	-2.3
1,194,046	+		Atu4075	0.78	-1.6
1,194,130	-		Atu4075	0.84	-2.2
1,194,143	-		Atu4075	0.85	-3.2
1,194,173	+		Atu4075	0.87	-2.8
1,194,214	+		Atu4075	0.90	-0.5
1,194,244	-				-0.5
1,194,321	-				-1.5
1,194,343	+				-2.9
1,194,510	-		Atu4076	0.11	-0.3
1,194,591	+		Atu4076	0.18	+0.1
1,194,599	-		Atu4076	0.19	+0.0
1,194,669	-		Atu4076	0.24	+0.1
1,194,713	+		Atu4076	0.28	+0.6
1,194,725	+		Atu4076	0.29	-0.0
1,194,733	-		Atu4076	0.29	-0.3
1,194,786	+		Atu4076	0.33	-0.8
1,194,888	+		Atu4076	0.41	-0.1
1,194,896	-		Atu4076	0.42	-0.3
1,194,896	-		Atu4076	0.42	-0.6
1,195,002	+		Atu4076	0.50	+0.9
1,195,119	-		Atu4076	0.60	-0.7
1,195,194	-		Atu4076	0.66	-0.2
1,195,262	-		Atu4076	0.71	+0.2