Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3888 and Atu3889 are separated by 98 nucleotides Atu3889 and Atu3890 are separated by 6 nucleotides Atu3890 and Atu3891 are separated by 72 nucleotides
Atu3888: Atu3888 - hypothetical protein, at 982,526 to 983,545
Atu3888
Atu3889: Atu3889 - LysR family transcriptional regulator, at 983,644 to 984,504
Atu3889
Atu3890: Atu3890 - glycerol kinase, at 984,511 to 986,010
Atu3890
Atu3891: Atu3891 - hypothetical protein, at 986,083 to 987,804
Atu3891
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 983.540 kb on + strand at 983.728 kb on + strand at 983.728 kb on + strand at 983.760 kb on + strand, within Atu3889 at 983.806 kb on - strand, within Atu3889 at 983.835 kb on - strand, within Atu3889 at 983.836 kb on + strand, within Atu3889 at 983.916 kb on + strand, within Atu3889 at 983.921 kb on + strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.924 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 983.929 kb on - strand, within Atu3889 at 984.002 kb on + strand, within Atu3889 at 984.010 kb on - strand, within Atu3889 at 984.016 kb on + strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.024 kb on - strand, within Atu3889 at 984.046 kb on - strand, within Atu3889 at 984.110 kb on - strand, within Atu3889 at 984.146 kb on + strand, within Atu3889 at 984.191 kb on + strand, within Atu3889 at 984.237 kb on + strand, within Atu3889 at 984.247 kb on + strand, within Atu3889 at 984.428 kb on - strand at 984.439 kb on + strand at 984.624 kb on - strand at 984.643 kb on - strand at 984.683 kb on + strand, within Atu3890 at 984.690 kb on + strand, within Atu3890 at 984.762 kb on + strand, within Atu3890 at 984.798 kb on - strand, within Atu3890 at 984.803 kb on - strand, within Atu3890 at 984.821 kb on - strand, within Atu3890 at 984.994 kb on - strand, within Atu3890 at 985.030 kb on + strand, within Atu3890 at 985.030 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.229 kb on + strand, within Atu3890 at 985.357 kb on + strand, within Atu3890 at 985.360 kb on - strand, within Atu3890 at 985.365 kb on - strand, within Atu3890 at 985.436 kb on - strand, within Atu3890 at 985.497 kb on + strand, within Atu3890 at 985.505 kb on - strand, within Atu3890 at 985.674 kb on - strand, within Atu3890 at 985.703 kb on + strand, within Atu3890 at 985.718 kb on - strand, within Atu3890 at 985.720 kb on + strand, within Atu3890 at 985.770 kb on + strand, within Atu3890 at 985.778 kb on - strand, within Atu3890 at 985.873 kb on + strand at 985.881 kb on - strand at 985.928 kb on - strand at 985.964 kb on - strand at 986.071 kb on - strand at 986.242 kb on + strand at 986.245 kb on + strand at 986.247 kb on + strand at 986.294 kb on - strand, within Atu3891 at 986.490 kb on + strand, within Atu3891 at 986.563 kb on - strand, within Atu3891 at 986.563 kb on - strand, within Atu3891 at 986.646 kb on + strand, within Atu3891 at 986.705 kb on + strand, within Atu3891 at 986.772 kb on - strand, within Atu3891 at 986.794 kb on - strand, within Atu3891 at 986.799 kb on - strand, within Atu3891 at 986.811 kb on - strand, within Atu3891 at 986.824 kb on + strand, within Atu3891 at 986.825 kb on + strand, within Atu3891 at 986.825 kb on + strand, within Atu3891 at 986.833 kb on - strand, within Atu3891 at 986.837 kb on + strand, within Atu3891
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 983,540 + -0.1 983,728 + -0.2 983,728 + -0.0 983,760 + Atu3889 0.13 -0.4 983,806 - Atu3889 0.19 -0.6 983,835 - Atu3889 0.22 +0.5 983,836 + Atu3889 0.22 -0.3 983,916 + Atu3889 0.32 +1.0 983,921 + Atu3889 0.32 +0.1 983,924 - Atu3889 0.33 -0.2 983,924 - Atu3889 0.33 -0.6 983,929 - Atu3889 0.33 -0.8 983,929 - Atu3889 0.33 -0.3 984,002 + Atu3889 0.42 -0.1 984,010 - Atu3889 0.43 -0.3 984,016 + Atu3889 0.43 -0.7 984,024 - Atu3889 0.44 -0.1 984,024 - Atu3889 0.44 -0.5 984,046 - Atu3889 0.47 -0.6 984,110 - Atu3889 0.54 -0.7 984,146 + Atu3889 0.58 +0.1 984,191 + Atu3889 0.64 +0.0 984,237 + Atu3889 0.69 -0.3 984,247 + Atu3889 0.70 -0.2 984,428 - +0.2 984,439 + -0.4 984,624 - -0.2 984,643 - -1.2 984,683 + Atu3890 0.11 +0.1 984,690 + Atu3890 0.12 -1.2 984,762 + Atu3890 0.17 -2.0 984,798 - Atu3890 0.19 -0.2 984,803 - Atu3890 0.19 -0.2 984,821 - Atu3890 0.21 -0.6 984,994 - Atu3890 0.32 -1.3 985,030 + Atu3890 0.35 -0.8 985,030 + Atu3890 0.35 -0.7 985,203 + Atu3890 0.46 -0.4 985,203 + Atu3890 0.46 -0.6 985,203 + Atu3890 0.46 -0.9 985,229 + Atu3890 0.48 -0.6 985,357 + Atu3890 0.56 -1.5 985,360 - Atu3890 0.57 -0.5 985,365 - Atu3890 0.57 +1.0 985,436 - Atu3890 0.62 -1.0 985,497 + Atu3890 0.66 -0.8 985,505 - Atu3890 0.66 -1.2 985,674 - Atu3890 0.78 -1.0 985,703 + Atu3890 0.79 -1.6 985,718 - Atu3890 0.80 -1.0 985,720 + Atu3890 0.81 -1.3 985,770 + Atu3890 0.84 -1.4 985,778 - Atu3890 0.84 -2.8 985,873 + -1.2 985,881 - -1.0 985,928 - -0.6 985,964 - -0.6 986,071 - +0.5 986,242 + +0.1 986,245 + +0.1 986,247 + +0.2 986,294 - Atu3891 0.12 +0.5 986,490 + Atu3891 0.24 -0.9 986,563 - Atu3891 0.28 +0.0 986,563 - Atu3891 0.28 -1.6 986,646 + Atu3891 0.33 -0.6 986,705 + Atu3891 0.36 +0.3 986,772 - Atu3891 0.40 -0.1 986,794 - Atu3891 0.41 +0.1 986,799 - Atu3891 0.42 -1.0 986,811 - Atu3891 0.42 -0.6 986,824 + Atu3891 0.43 +1.0 986,825 + Atu3891 0.43 +0.1 986,825 + Atu3891 0.43 -0.6 986,833 - Atu3891 0.44 -0.7 986,837 + Atu3891 0.44 -0.7
Or see this region's nucleotide sequence