Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3286 and Atu3287 are separated by 50 nucleotides Atu3287 and Atu3288 overlap by 4 nucleotides Atu3288 and Atu3289 overlap by 14 nucleotides
Atu3286: Atu3286 - ABC transporter permease, at 313,002 to 313,787
Atu3286
Atu3287: Atu3287 - thiamine biosynthesis associated protein, at 313,838 to 314,734
Atu3287
Atu3288: Atu3288 - hydroxyethylthiazole kinase, at 314,731 to 315,471
Atu3288
Atu3289: Atu3289 - thiamine-phosphate pyrophosphorylase, at 315,458 to 316,120
Atu3289
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 312.906 kb on + strand at 312.906 kb on + strand at 312.914 kb on - strand at 312.928 kb on + strand at 312.957 kb on + strand at 312.996 kb on + strand at 313.012 kb on + strand at 313.035 kb on - strand at 313.060 kb on + strand at 313.154 kb on + strand, within Atu3286 at 313.255 kb on + strand, within Atu3286 at 313.327 kb on + strand, within Atu3286 at 313.397 kb on - strand, within Atu3286 at 313.415 kb on - strand, within Atu3286 at 313.487 kb on - strand, within Atu3286 at 313.521 kb on + strand, within Atu3286 at 313.621 kb on - strand, within Atu3286 at 313.629 kb on - strand, within Atu3286 at 313.677 kb on + strand, within Atu3286 at 313.682 kb on + strand, within Atu3286 at 313.693 kb on + strand, within Atu3286 at 313.735 kb on + strand at 313.796 kb on + strand at 313.979 kb on - strand, within Atu3287 at 314.035 kb on - strand, within Atu3287 at 314.044 kb on + strand, within Atu3287 at 314.103 kb on - strand, within Atu3287 at 314.232 kb on - strand, within Atu3287 at 314.245 kb on + strand, within Atu3287 at 314.342 kb on - strand, within Atu3287 at 314.481 kb on + strand, within Atu3287 at 314.489 kb on - strand, within Atu3287 at 314.565 kb on - strand, within Atu3287 at 314.568 kb on - strand, within Atu3287 at 314.622 kb on - strand, within Atu3287 at 314.678 kb on - strand at 314.678 kb on - strand at 314.770 kb on + strand at 314.793 kb on - strand at 314.828 kb on - strand, within Atu3288 at 314.934 kb on - strand, within Atu3288 at 314.959 kb on + strand, within Atu3288 at 315.244 kb on + strand, within Atu3288 at 315.254 kb on + strand, within Atu3288 at 315.278 kb on + strand, within Atu3288 at 315.323 kb on + strand, within Atu3288 at 315.344 kb on + strand, within Atu3288 at 315.345 kb on - strand, within Atu3288 at 315.352 kb on - strand, within Atu3288 at 315.366 kb on + strand, within Atu3288 at 315.467 kb on + strand at 315.475 kb on - strand at 315.503 kb on - strand at 315.670 kb on - strand, within Atu3289
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 312,906 + -0.1 312,906 + -0.2 312,914 - -0.2 312,928 + +1.3 312,957 + -0.5 312,996 + -0.7 313,012 + -0.3 313,035 - +1.1 313,060 + -0.3 313,154 + Atu3286 0.19 -0.8 313,255 + Atu3286 0.32 +0.4 313,327 + Atu3286 0.41 +0.0 313,397 - Atu3286 0.50 -2.0 313,415 - Atu3286 0.53 -0.4 313,487 - Atu3286 0.62 -0.0 313,521 + Atu3286 0.66 -1.1 313,621 - Atu3286 0.79 -0.2 313,629 - Atu3286 0.80 -0.3 313,677 + Atu3286 0.86 +0.2 313,682 + Atu3286 0.87 -0.7 313,693 + Atu3286 0.88 +0.0 313,735 + +0.5 313,796 + -1.1 313,979 - Atu3287 0.16 -0.6 314,035 - Atu3287 0.22 +1.5 314,044 + Atu3287 0.23 +0.2 314,103 - Atu3287 0.30 +0.5 314,232 - Atu3287 0.44 -0.6 314,245 + Atu3287 0.45 +1.3 314,342 - Atu3287 0.56 -0.2 314,481 + Atu3287 0.72 +1.0 314,489 - Atu3287 0.73 +0.2 314,565 - Atu3287 0.81 +2.5 314,568 - Atu3287 0.81 -0.1 314,622 - Atu3287 0.87 -0.5 314,678 - -0.3 314,678 - +0.4 314,770 + -0.3 314,793 - -0.5 314,828 - Atu3288 0.13 -1.2 314,934 - Atu3288 0.27 +0.4 314,959 + Atu3288 0.31 -0.2 315,244 + Atu3288 0.69 +0.2 315,254 + Atu3288 0.71 +1.1 315,278 + Atu3288 0.74 -0.5 315,323 + Atu3288 0.80 +0.2 315,344 + Atu3288 0.83 +0.9 315,345 - Atu3288 0.83 -0.3 315,352 - Atu3288 0.84 -0.1 315,366 + Atu3288 0.86 +1.3 315,467 + -0.5 315,475 - +1.3 315,503 - -0.9 315,670 - Atu3289 0.32 -0.4
Or see this region's nucleotide sequence