Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3135 and Atu3136 are separated by 0 nucleotides Atu3136 and Atu3137 are separated by 70 nucleotides Atu3137 and Atu3138 are separated by 143 nucleotides
Atu3135: Atu3135 - ABC transporter permease, at 143,113 to 144,393
Atu3135
Atu3136: Atu3136 - ABC transporter permease, at 144,394 to 144,915
Atu3136
Atu3137: Atu3137 - C4-dicarboxylate-binding protein, at 144,986 to 145,963
Atu3137
Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985
Atu3138
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2 at 143.990 kb on + strand, within Atu3135 at 143.998 kb on - strand, within Atu3135 at 144.039 kb on - strand, within Atu3135 at 144.104 kb on + strand, within Atu3135 at 144.112 kb on - strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.197 kb on - strand, within Atu3135 at 144.300 kb on - strand at 144.361 kb on + strand at 144.369 kb on - strand at 144.430 kb on + strand at 144.537 kb on + strand, within Atu3136 at 144.586 kb on + strand, within Atu3136 at 144.605 kb on + strand, within Atu3136 at 144.623 kb on - strand, within Atu3136 at 144.705 kb on + strand, within Atu3136 at 144.731 kb on + strand, within Atu3136 at 144.759 kb on + strand, within Atu3136 at 144.845 kb on - strand, within Atu3136 at 145.052 kb on + strand at 145.060 kb on - strand at 145.156 kb on - strand, within Atu3137 at 145.218 kb on - strand, within Atu3137 at 145.280 kb on - strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.418 kb on + strand, within Atu3137 at 145.436 kb on + strand, within Atu3137 at 145.449 kb on - strand, within Atu3137 at 145.556 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.740 kb on - strand, within Atu3137 at 145.745 kb on - strand, within Atu3137 at 145.750 kb on - strand, within Atu3137 at 145.785 kb on - strand, within Atu3137 at 145.868 kb on - strand at 145.872 kb on - strand at 145.916 kb on - strand at 145.989 kb on + strand at 146.030 kb on + strand at 146.338 kb on + strand, within Atu3138 at 146.414 kb on - strand, within Atu3138 at 146.531 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.779 kb on - strand, within Atu3138 at 146.789 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.862 kb on + strand, within Atu3138 at 146.870 kb on - strand, within Atu3138 at 146.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 143,990 + Atu3135 0.68 +0.1 143,998 - Atu3135 0.69 -0.0 144,039 - Atu3135 0.72 -0.5 144,104 + Atu3135 0.77 -0.9 144,112 - Atu3135 0.78 -1.5 144,114 + Atu3135 0.78 +0.1 144,114 + Atu3135 0.78 -0.2 144,197 - Atu3135 0.85 -0.8 144,300 - +0.3 144,361 + -0.5 144,369 - +0.5 144,430 + +0.2 144,537 + Atu3136 0.27 -0.4 144,586 + Atu3136 0.37 -0.7 144,605 + Atu3136 0.40 +0.2 144,623 - Atu3136 0.44 -0.3 144,705 + Atu3136 0.60 -0.9 144,731 + Atu3136 0.65 -0.1 144,759 + Atu3136 0.70 +0.0 144,845 - Atu3136 0.86 +0.0 145,052 + +0.3 145,060 - +0.2 145,156 - Atu3137 0.17 +0.1 145,218 - Atu3137 0.24 -1.1 145,280 - Atu3137 0.30 +0.1 145,374 + Atu3137 0.40 -1.4 145,374 + Atu3137 0.40 -0.0 145,418 + Atu3137 0.44 +0.4 145,436 + Atu3137 0.46 +0.8 145,449 - Atu3137 0.47 -0.1 145,556 + Atu3137 0.58 -0.3 145,608 + Atu3137 0.64 +0.2 145,608 + Atu3137 0.64 +0.5 145,740 - Atu3137 0.77 +0.3 145,745 - Atu3137 0.78 -0.3 145,750 - Atu3137 0.78 +0.9 145,785 - Atu3137 0.82 +0.6 145,868 - +0.3 145,872 - -0.1 145,916 - +0.3 145,989 + -0.0 146,030 + -1.5 146,338 + Atu3138 0.26 -1.2 146,414 - Atu3138 0.35 -0.4 146,531 + Atu3138 0.48 -0.6 146,766 + Atu3138 0.75 -0.2 146,766 + Atu3138 0.75 -0.3 146,779 - Atu3138 0.76 -0.7 146,789 - Atu3138 0.78 +1.9 146,804 - Atu3138 0.79 -0.1 146,804 - Atu3138 0.79 -0.3 146,862 + Atu3138 0.86 +0.1 146,870 - Atu3138 0.87 -0.1 146,952 - +0.7
Or see this region's nucleotide sequence