Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3046 and Atu3047 are separated by 11 nucleotides Atu3047 and Atu3048 are separated by 41 nucleotides
Atu3046: Atu3046 - oxidoreductase, at 42,150 to 43,475
Atu3046
Atu3047: Atu3047 - oligopeptide ABC transporter permease, at 43,487 to 44,377
Atu3047
Atu3048: Atu3048 - oligopeptide ABC transporter permease, at 44,419 to 45,369
Atu3048
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.508 kb on + strand, within Atu3046 at 42.529 kb on + strand, within Atu3046 at 42.650 kb on - strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.732 kb on - strand, within Atu3046 at 42.745 kb on + strand, within Atu3046 at 42.765 kb on + strand, within Atu3046 at 42.770 kb on + strand, within Atu3046 at 42.784 kb on + strand, within Atu3046 at 42.794 kb on + strand, within Atu3046 at 42.807 kb on - strand, within Atu3046 at 42.816 kb on + strand, within Atu3046 at 42.921 kb on + strand, within Atu3046 at 42.989 kb on + strand, within Atu3046 at 42.997 kb on - strand, within Atu3046 at 43.032 kb on - strand, within Atu3046 at 43.066 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.074 kb on - strand, within Atu3046 at 43.088 kb on - strand, within Atu3046 at 43.095 kb on + strand, within Atu3046 at 43.095 kb on + strand, within Atu3046 at 43.186 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.344 kb on + strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.361 kb on - strand at 43.362 kb on - strand at 43.378 kb on - strand at 43.384 kb on + strand at 43.384 kb on + strand at 43.392 kb on - strand at 43.540 kb on + strand at 43.600 kb on - strand, within Atu3047 at 43.608 kb on + strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.912 kb on + strand, within Atu3047 at 43.996 kb on - strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.140 kb on + strand, within Atu3047 at 44.148 kb on - strand, within Atu3047 at 44.423 kb on - strand at 44.482 kb on - strand at 44.492 kb on - strand at 44.563 kb on + strand, within Atu3048 at 44.563 kb on + strand, within Atu3048 at 44.568 kb on + strand, within Atu3048 at 44.568 kb on + strand, within Atu3048 at 44.571 kb on - strand, within Atu3048 at 44.578 kb on + strand, within Atu3048 at 44.578 kb on + strand, within Atu3048 at 44.586 kb on - strand, within Atu3048 at 44.586 kb on - strand, within Atu3048 at 44.609 kb on - strand, within Atu3048 at 44.650 kb on + strand, within Atu3048 at 44.655 kb on - strand, within Atu3048 at 44.956 kb on + strand, within Atu3048 at 45.009 kb on + strand, within Atu3048 at 45.017 kb on - strand, within Atu3048 at 45.017 kb on - strand, within Atu3048 at 45.136 kb on - strand, within Atu3048 at 45.190 kb on - strand, within Atu3048 at 45.369 kb on - strand at 45.370 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 42,508 + Atu3046 0.27 +0.6 42,529 + Atu3046 0.29 -0.1 42,650 - Atu3046 0.38 +0.5 42,724 + Atu3046 0.43 -0.2 42,724 + Atu3046 0.43 +0.2 42,732 - Atu3046 0.44 +0.1 42,745 + Atu3046 0.45 -0.3 42,765 + Atu3046 0.46 -0.1 42,770 + Atu3046 0.47 +0.2 42,784 + Atu3046 0.48 +0.2 42,794 + Atu3046 0.49 -0.2 42,807 - Atu3046 0.50 +0.0 42,816 + Atu3046 0.50 +0.0 42,921 + Atu3046 0.58 +0.1 42,989 + Atu3046 0.63 -0.1 42,997 - Atu3046 0.64 +0.3 43,032 - Atu3046 0.67 -0.2 43,066 + Atu3046 0.69 +0.2 43,068 + Atu3046 0.69 -0.7 43,068 + Atu3046 0.69 +0.1 43,074 - Atu3046 0.70 +0.3 43,088 - Atu3046 0.71 -1.3 43,095 + Atu3046 0.71 -0.2 43,095 + Atu3046 0.71 +0.3 43,186 + Atu3046 0.78 -0.7 43,331 + Atu3046 0.89 +0.5 43,331 + Atu3046 0.89 +0.1 43,331 + Atu3046 0.89 +0.1 43,344 + +0.5 43,352 - +0.2 43,352 - -1.0 43,352 - -1.1 43,352 - +0.1 43,361 - +0.1 43,362 - +0.4 43,378 - +0.1 43,384 + +0.5 43,384 + -0.1 43,392 - +1.1 43,540 + +0.4 43,600 - Atu3047 0.13 +0.4 43,608 + Atu3047 0.14 +0.5 43,895 - Atu3047 0.46 +0.4 43,895 - Atu3047 0.46 -0.1 43,912 + Atu3047 0.48 -0.2 43,996 - Atu3047 0.57 +0.3 44,013 + Atu3047 0.59 +0.0 44,013 + Atu3047 0.59 +0.8 44,013 + Atu3047 0.59 +0.2 44,103 + Atu3047 0.69 +0.2 44,103 + Atu3047 0.69 +0.3 44,140 + Atu3047 0.73 +0.5 44,148 - Atu3047 0.74 +0.4 44,423 - -0.5 44,482 - +0.5 44,492 - +0.2 44,563 + Atu3048 0.15 +0.7 44,563 + Atu3048 0.15 +0.2 44,568 + Atu3048 0.16 +0.7 44,568 + Atu3048 0.16 -0.0 44,571 - Atu3048 0.16 -0.4 44,578 + Atu3048 0.17 +0.3 44,578 + Atu3048 0.17 +0.0 44,586 - Atu3048 0.18 +0.3 44,586 - Atu3048 0.18 +1.5 44,609 - Atu3048 0.20 -0.1 44,650 + Atu3048 0.24 +0.2 44,655 - Atu3048 0.25 +0.7 44,956 + Atu3048 0.56 +0.2 45,009 + Atu3048 0.62 -0.5 45,017 - Atu3048 0.63 +0.4 45,017 - Atu3048 0.63 +0.2 45,136 - Atu3048 0.75 +0.5 45,190 - Atu3048 0.81 -0.0 45,369 - +1.4 45,370 + +0.0
Or see this region's nucleotide sequence