Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3039 and Atu3040 overlap by 8 nucleotides Atu3040 and Atu3041 are separated by 43 nucleotides
Atu3039: Atu3039 - hydantoinase beta subunit-like protein, at 33,615 to 35,171
Atu3039
Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297
Atu3040
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1 at 34.260 kb on + strand, within Atu3039 at 34.299 kb on + strand, within Atu3039 at 34.317 kb on - strand, within Atu3039 at 34.337 kb on - strand, within Atu3039 at 34.350 kb on + strand, within Atu3039 at 34.353 kb on - strand, within Atu3039 at 34.407 kb on + strand, within Atu3039 at 34.415 kb on - strand, within Atu3039 at 34.418 kb on - strand, within Atu3039 at 34.567 kb on + strand, within Atu3039 at 34.575 kb on - strand, within Atu3039 at 34.657 kb on + strand, within Atu3039 at 34.665 kb on - strand, within Atu3039 at 34.699 kb on + strand, within Atu3039 at 34.745 kb on + strand, within Atu3039 at 34.800 kb on - strand, within Atu3039 at 34.902 kb on - strand, within Atu3039 at 34.913 kb on + strand, within Atu3039 at 34.913 kb on + strand, within Atu3039 at 34.938 kb on + strand, within Atu3039 at 34.951 kb on - strand, within Atu3039 at 34.972 kb on - strand, within Atu3039 at 35.065 kb on + strand at 35.065 kb on + strand at 35.132 kb on + strand at 35.256 kb on + strand at 35.362 kb on - strand, within Atu3040 at 35.373 kb on + strand, within Atu3040 at 35.401 kb on + strand, within Atu3040 at 35.440 kb on + strand, within Atu3040 at 35.448 kb on - strand, within Atu3040 at 35.551 kb on - strand, within Atu3040 at 35.665 kb on + strand, within Atu3040 at 35.677 kb on + strand, within Atu3040 at 35.680 kb on + strand, within Atu3040 at 35.719 kb on + strand, within Atu3040 at 35.725 kb on + strand, within Atu3040 at 35.727 kb on - strand, within Atu3040 at 35.733 kb on - strand, within Atu3040 at 35.797 kb on + strand, within Atu3040 at 35.805 kb on - strand, within Atu3040 at 35.892 kb on + strand, within Atu3040 at 35.989 kb on - strand, within Atu3040 at 35.999 kb on - strand, within Atu3040 at 36.127 kb on - strand, within Atu3040 at 36.190 kb on + strand at 36.243 kb on - strand at 36.243 kb on - strand at 36.290 kb on - strand at 36.290 kb on - strand at 36.290 kb on - strand at 36.375 kb on - strand at 36.469 kb on + strand at 36.588 kb on - strand, within Atu3041 at 36.634 kb on + strand, within Atu3041 at 36.642 kb on + strand, within Atu3041 at 36.642 kb on + strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.650 kb on - strand, within Atu3041 at 36.798 kb on + strand, within Atu3041 at 36.862 kb on - strand, within Atu3041 at 36.918 kb on - strand, within Atu3041 at 36.923 kb on + strand, within Atu3041 at 36.925 kb on - strand, within Atu3041 at 36.948 kb on + strand, within Atu3041 at 36.995 kb on + strand, within Atu3041 at 37.064 kb on + strand, within Atu3041 at 37.072 kb on - strand, within Atu3041 at 37.128 kb on + strand, within Atu3041 at 37.176 kb on - strand, within Atu3041 at 37.194 kb on - strand, within Atu3041 at 37.217 kb on + strand, within Atu3041 at 37.234 kb on + strand, within Atu3041 at 37.235 kb on - strand, within Atu3041 at 37.288 kb on + strand, within Atu3041 at 37.296 kb on - strand, within Atu3041
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 34,260 + Atu3039 0.41 -0.5 34,299 + Atu3039 0.44 +0.2 34,317 - Atu3039 0.45 +1.1 34,337 - Atu3039 0.46 +0.4 34,350 + Atu3039 0.47 +1.5 34,353 - Atu3039 0.47 +0.4 34,407 + Atu3039 0.51 +0.9 34,415 - Atu3039 0.51 +0.5 34,418 - Atu3039 0.52 -0.7 34,567 + Atu3039 0.61 -0.2 34,575 - Atu3039 0.62 +0.2 34,657 + Atu3039 0.67 +0.3 34,665 - Atu3039 0.67 +0.2 34,699 + Atu3039 0.70 +0.6 34,745 + Atu3039 0.73 +0.4 34,800 - Atu3039 0.76 +0.3 34,902 - Atu3039 0.83 +0.1 34,913 + Atu3039 0.83 +0.4 34,913 + Atu3039 0.83 +0.3 34,938 + Atu3039 0.85 -0.2 34,951 - Atu3039 0.86 +0.2 34,972 - Atu3039 0.87 +0.9 35,065 + +0.1 35,065 + +0.2 35,132 + +0.3 35,256 + +0.9 35,362 - Atu3040 0.17 +0.3 35,373 + Atu3040 0.18 -0.2 35,401 + Atu3040 0.21 -0.1 35,440 + Atu3040 0.24 +0.5 35,448 - Atu3040 0.25 +0.2 35,551 - Atu3040 0.34 +0.4 35,665 + Atu3040 0.44 +1.0 35,677 + Atu3040 0.45 +1.0 35,680 + Atu3040 0.46 +0.1 35,719 + Atu3040 0.49 +0.4 35,725 + Atu3040 0.49 +0.3 35,727 - Atu3040 0.50 +0.5 35,733 - Atu3040 0.50 +0.9 35,797 + Atu3040 0.56 -0.1 35,805 - Atu3040 0.57 +0.5 35,892 + Atu3040 0.64 +0.4 35,989 - Atu3040 0.73 +1.5 35,999 - Atu3040 0.74 +0.1 36,127 - Atu3040 0.85 +0.9 36,190 + +0.3 36,243 - -0.0 36,243 - +0.4 36,290 - +0.8 36,290 - +0.6 36,290 - +0.6 36,375 - +0.4 36,469 + -0.2 36,588 - Atu3041 0.15 -1.2 36,634 + Atu3041 0.18 -0.1 36,642 + Atu3041 0.19 +0.5 36,642 + Atu3041 0.19 +0.4 36,650 - Atu3041 0.19 +0.1 36,650 - Atu3041 0.19 +0.2 36,650 - Atu3041 0.19 -0.2 36,798 + Atu3041 0.28 +0.4 36,862 - Atu3041 0.32 +0.6 36,918 - Atu3041 0.36 +0.4 36,923 + Atu3041 0.36 -1.1 36,925 - Atu3041 0.36 +0.2 36,948 + Atu3041 0.38 +0.1 36,995 + Atu3041 0.41 +0.4 37,064 + Atu3041 0.45 +0.6 37,072 - Atu3041 0.45 +1.2 37,128 + Atu3041 0.49 +0.5 37,176 - Atu3041 0.52 +0.3 37,194 - Atu3041 0.53 +0.2 37,217 + Atu3041 0.54 +1.0 37,234 + Atu3041 0.55 +0.3 37,235 - Atu3041 0.55 -0.2 37,288 + Atu3041 0.59 +0.5 37,296 - Atu3041 0.59 +0.4
Or see this region's nucleotide sequence