Strain Fitness in Agrobacterium fabrum C58 around Atu3037

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3036 and Atu3037 overlap by 1 nucleotidesAtu3037 and Atu3038 are separated by 4 nucleotides Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066 Atu3036 Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947 Atu3037 Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598 Atu3038 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1at 30.091 kb on + strandat 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.596 kb on - strand, within Atu3036at 30.758 kb on - strand, within Atu3036at 30.938 kb on - strand, within Atu3036at 30.946 kb on + strand, within Atu3036at 31.006 kb on + strandat 31.099 kb on - strandat 31.104 kb on - strandat 31.131 kb on - strandat 31.231 kb on - strand, within Atu3037at 31.342 kb on - strand, within Atu3037at 31.379 kb on + strand, within Atu3037at 31.402 kb on + strand, within Atu3037at 31.405 kb on - strand, within Atu3037at 31.587 kb on + strand, within Atu3037at 31.669 kb on + strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.764 kb on - strand, within Atu3037at 31.793 kb on + strand, within Atu3037at 31.800 kb on - strand, within Atu3037at 31.801 kb on - strand, within Atu3037at 31.857 kb on + strand, within Atu3037at 31.862 kb on + strandat 31.865 kb on - strandat 31.870 kb on - strandat 31.873 kb on + strandat 31.873 kb on + strandat 31.895 kb on + strandat 31.956 kb on - strandat 31.961 kb on - strandat 32.008 kb on - strandat 32.021 kb on + strandat 32.029 kb on - strandat 32.088 kb on - strandat 32.156 kb on - strand, within Atu3038at 32.172 kb on + strand, within Atu3038at 32.244 kb on - strand, within Atu3038at 32.338 kb on + strand, within Atu3038at 32.372 kb on + strand, within Atu3038at 32.380 kb on - strand, within Atu3038at 32.390 kb on - strand, within Atu3038at 32.415 kb on - strand, within Atu3038at 32.459 kb on - strand, within Atu3038at 32.601 kb on - strand, within Atu3038at 32.612 kb on + strand, within Atu3038at 32.661 kb on - strand, within Atu3038at 32.676 kb on - strand, within Atu3038at 32.686 kb on - strand, within Atu3038at 32.688 kb on + strand, within Atu3038at 32.731 kb on + strand, within Atu3038

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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30,091 + +0.2
30,358 + Atu3036 0.31 +0.4
30,358 + Atu3036 0.31 +0.5
30,358 + Atu3036 0.31 +0.0
30,596 - Atu3036 0.54 +0.0
30,758 - Atu3036 0.70 +0.5
30,938 - Atu3036 0.87 -0.0
30,946 + Atu3036 0.88 +1.0
31,006 + +0.3
31,099 - +0.3
31,104 - +0.4
31,131 - +0.7
31,231 - Atu3037 0.19 +0.2
31,342 - Atu3037 0.31 +0.3
31,379 + Atu3037 0.35 +0.1
31,402 + Atu3037 0.38 +0.4
31,405 - Atu3037 0.38 +0.5
31,587 + Atu3037 0.59 +0.4
31,669 + Atu3037 0.68 -0.5
31,718 - Atu3037 0.74 +0.4
31,718 - Atu3037 0.74 +0.5
31,718 - Atu3037 0.74 -0.1
31,764 - Atu3037 0.79 +0.5
31,793 + Atu3037 0.82 +0.6
31,800 - Atu3037 0.83 +0.2
31,801 - Atu3037 0.83 +0.3
31,857 + Atu3037 0.90 +0.6
31,862 + +0.2
31,865 - +0.6
31,870 - +0.4
31,873 + +1.5
31,873 + +0.2
31,895 + +1.5
31,956 - -0.2
31,961 - +0.5
32,008 - +0.3
32,021 + -0.1
32,029 - +0.3
32,088 - +1.1
32,156 - Atu3038 0.12 +0.5
32,172 + Atu3038 0.13 +0.4
32,244 - Atu3038 0.18 -0.7
32,338 + Atu3038 0.23 -0.6
32,372 + Atu3038 0.26 +0.4
32,380 - Atu3038 0.26 +0.1
32,390 - Atu3038 0.27 +0.6
32,415 - Atu3038 0.28 +0.3
32,459 - Atu3038 0.31 +0.6
32,601 - Atu3038 0.39 +0.4
32,612 + Atu3038 0.40 +0.7
32,661 - Atu3038 0.43 +1.1
32,676 - Atu3038 0.44 +0.4
32,686 - Atu3038 0.45 +1.1
32,688 + Atu3038 0.45 +0.3
32,731 + Atu3038 0.47 +0.4

Or see this region's nucleotide sequence