Strain Fitness in Agrobacterium fabrum C58 around Atu3029

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
23,167	+		Atu3027	0.85	+0.7
23,167	+		Atu3027	0.85	+1.0
23,175	-		Atu3027	0.85	-0.3
23,175	-		Atu3027	0.85	+0.9
23,197	-		Atu3027	0.88	+0.9
23,201	+		Atu3027	0.88	+1.0
23,286	-				+0.9
23,344	+				+0.6
23,354	+				+0.6
23,362	-				+0.9
23,362	-				+1.1
23,384	+				+0.6
23,438	+		Atu3028	0.15	+0.9
23,445	+		Atu3028	0.16	+0.4
23,527	+		Atu3028	0.26	+1.3
23,574	+		Atu3028	0.32	+0.3
23,576	-		Atu3028	0.32	+0.5
23,591	+		Atu3028	0.34	+1.2
23,594	+		Atu3028	0.35	-0.1
23,602	-		Atu3028	0.36	+0.5
23,682	+		Atu3028	0.46	+0.6
23,690	-		Atu3028	0.47	+0.7
23,690	-		Atu3028	0.47	+1.3
23,699	+		Atu3028	0.48	+0.6
23,711	+		Atu3028	0.49	+0.3
23,719	-		Atu3028	0.50	+0.9
23,789	+		Atu3028	0.59	-0.4
23,793	+		Atu3028	0.60	+0.5
23,793	+		Atu3028	0.60	-1.9
23,829	-		Atu3028	0.64	+0.9
23,832	-		Atu3028	0.65	+0.8
23,934	+		Atu3028	0.77	+0.6
24,072	+				+0.6
24,080	-				-0.3
24,080	-				+1.0
24,080	-				+0.8
24,087	-				+1.1
24,106	+				+0.3
24,154	+				+0.1
24,158	-				+1.2
24,165	+				+0.2
24,175	+				+0.6
24,189	-				+0.5
24,206	-				+1.3
24,233	+				+0.3
24,252	-		Atu3029	0.11	-0.1
24,282	+		Atu3029	0.13	-0.9
24,283	-		Atu3029	0.14	+1.0
24,425	+		Atu3029	0.25	+0.8
24,510	+		Atu3029	0.32	+0.8
24,518	-		Atu3029	0.32	+0.8
24,518	-		Atu3029	0.32	+0.8
24,520	+		Atu3029	0.33	+1.2
24,535	-		Atu3029	0.34	+0.3
24,571	-		Atu3029	0.37	-0.0
24,821	-		Atu3029	0.57	+1.0
24,832	+		Atu3029	0.58	+0.6
24,844	+		Atu3029	0.58	+1.5
24,885	-		Atu3029	0.62	+0.8
24,972	+		Atu3029	0.69	+0.4
25,026	+		Atu3029	0.73	+0.1
25,034	-		Atu3029	0.74	+1.0
25,034	-		Atu3029	0.74	+1.0
25,034	-		Atu3029	0.74	+0.9
25,065	-		Atu3029	0.76	+0.9
25,224	-		Atu3029	0.89	+0.3
25,244	+				+1.1
25,278	-				+0.5
25,293	-				+0.5
25,376	+				+0.2
25,490	+		Atu3030	0.25	+0.8
25,498	-		Atu3030	0.27	+0.4
25,498	-		Atu3030	0.27	+0.8
25,498	-		Atu3030	0.27	+1.6
25,508	+		Atu3030	0.29	+0.4
25,665	-		Atu3030	0.70	+0.4
25,855	-				+0.6
25,947	+		Atu3031	0.38	+0.4
26,094	+				+0.4
26,111	+				+0.4
26,134	+				+1.0
26,341	+		Atu3032	0.53	+0.4