Strain Fitness in Agrobacterium fabrum C58 around Atu3027

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
21,385	+		Atu8093	0.23	-0.5
21,508	+		Atu8093	0.33	+0.5
21,516	-		Atu8093	0.34	+0.7
21,516	-		Atu8093	0.34	+0.9
21,671	-		Atu8093	0.47	+1.1
21,676	+		Atu8093	0.48	+1.2
21,790	-		Atu8093	0.57	+0.8
21,968	+		Atu8093	0.72	+0.9
22,130	+		Atu8093	0.86	+0.8
22,192	-				+0.5
22,214	+				+0.6
22,219	+				+1.4
22,305	+				+0.6
22,368	+				+1.0
22,375	+				+0.9
22,437	+		Atu3027	0.11	-0.1
22,507	+		Atu3027	0.18	+0.8
22,526	-		Atu3027	0.20	+0.7
22,590	+		Atu3027	0.27	+0.3
22,597	-		Atu3027	0.27	+0.7
22,702	+		Atu3027	0.38	+0.7
22,702	+		Atu3027	0.38	+0.7
22,710	-		Atu3027	0.39	+0.6
22,710	-		Atu3027	0.39	+0.7
22,710	-		Atu3027	0.39	+1.1
22,710	-		Atu3027	0.39	+0.3
22,751	+		Atu3027	0.43	+0.9
22,756	+		Atu3027	0.43	+0.8
22,764	-		Atu3027	0.44	+0.9
22,845	+		Atu3027	0.52	+0.5
22,939	+		Atu3027	0.62	-0.1
22,957	-		Atu3027	0.63	+1.0
22,993	-		Atu3027	0.67	+0.9
23,167	+		Atu3027	0.85	+0.7
23,167	+		Atu3027	0.85	+1.0
23,175	-		Atu3027	0.85	-0.3
23,175	-		Atu3027	0.85	+0.9
23,197	-		Atu3027	0.88	+0.9
23,201	+		Atu3027	0.88	+1.0
23,286	-				+0.9
23,344	+				+0.6
23,354	+				+0.6
23,362	-				+0.9
23,362	-				+1.1
23,384	+				+0.6
23,438	+		Atu3028	0.15	+0.9
23,445	+		Atu3028	0.16	+0.4
23,527	+		Atu3028	0.26	+1.3
23,574	+		Atu3028	0.32	+0.3
23,576	-		Atu3028	0.32	+0.5
23,591	+		Atu3028	0.34	+1.2
23,594	+		Atu3028	0.35	-0.1
23,602	-		Atu3028	0.36	+0.5
23,682	+		Atu3028	0.46	+0.6
23,690	-		Atu3028	0.47	+0.7
23,690	-		Atu3028	0.47	+1.3
23,699	+		Atu3028	0.48	+0.6
23,711	+		Atu3028	0.49	+0.3
23,719	-		Atu3028	0.50	+0.9
23,789	+		Atu3028	0.59	-0.4
23,793	+		Atu3028	0.60	+0.5
23,793	+		Atu3028	0.60	-1.9
23,829	-		Atu3028	0.64	+0.9
23,832	-		Atu3028	0.65	+0.8
23,934	+		Atu3028	0.77	+0.6
24,072	+				+0.6
24,080	-				-0.3
24,080	-				+1.0
24,080	-				+0.8
24,087	-				+1.1
24,106	+				+0.3
24,154	+				+0.1
24,158	-				+1.2
24,165	+				+0.2
24,175	+				+0.6
24,189	-				+0.5
24,206	-				+1.3
24,233	+				+0.3
24,252	-		Atu3029	0.11	-0.1
24,282	+		Atu3029	0.13	-0.9
24,283	-		Atu3029	0.14	+1.0