Strain Fitness in Agrobacterium fabrum C58 around Atu3023

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
14,493	-				+0.3
14,509	+				+0.6
14,563	-				+1.0
14,655	+		Atu3022	0.14	+1.1
14,794	+		Atu3022	0.29	+0.8
14,794	+		Atu3022	0.29	+0.7
14,800	+		Atu3022	0.30	+1.2
14,800	+		Atu3022	0.30	+1.0
14,848	+		Atu3022	0.35	-0.2
14,856	-		Atu3022	0.36	-0.3
14,861	-		Atu3022	0.36	+2.1
14,863	+		Atu3022	0.36	+0.8
14,863	+		Atu3022	0.36	+0.6
14,863	+		Atu3022	0.36	+0.7
14,866	-		Atu3022	0.37	+1.1
14,869	-		Atu3022	0.37	+1.2
14,871	-		Atu3022	0.37	+1.1
14,871	-		Atu3022	0.37	+0.3
14,919	-		Atu3022	0.42	+1.0
14,990	+		Atu3022	0.50	+1.0
15,055	+		Atu3022	0.57	+2.2
15,158	+		Atu3022	0.68	+1.7
15,158	+		Atu3022	0.68	+1.9
15,183	+		Atu3022	0.71	+1.1
15,191	-		Atu3022	0.72	+1.0
15,283	+		Atu3022	0.82	+1.1
15,336	+		Atu3022	0.87	+1.5
15,351	-		Atu3022	0.89	+1.5
15,362	+				+1.3
15,367	+				+1.0
15,370	-				+1.9
15,372	+				+1.7
15,558	-		Atu3023	0.11	+1.0
15,566	-		Atu3023	0.11	+1.1
15,579	+		Atu3023	0.13	+1.3
15,631	-		Atu3023	0.19	+1.9
15,680	+		Atu3023	0.24	+0.7
15,688	-		Atu3023	0.25	+1.4
15,688	-		Atu3023	0.25	+1.0
15,715	-		Atu3023	0.28	+1.0
15,716	-		Atu3023	0.28	+0.3
15,737	-		Atu3023	0.31	+0.6
15,760	+		Atu3023	0.33	+0.8
15,798	+		Atu3023	0.38	+0.5
15,846	+		Atu3023	0.43	+1.1
15,871	+		Atu3023	0.46	+0.6
15,879	-		Atu3023	0.47	+0.9
15,981	-		Atu3023	0.59	+0.7
16,027	-		Atu3023	0.64	+2.3
16,086	-		Atu3023	0.70	+0.8
16,171	+		Atu3023	0.80	+1.5
16,209	-		Atu3023	0.84	+0.9
16,231	-		Atu3023	0.87	-0.1
16,291	-				+1.2
16,343	-				+1.4
16,357	-				+0.4
16,367	+				+0.7
16,414	-				+1.3
16,457	+				+1.5
16,471	+				+1.2
16,538	+				+1.2
16,544	-				+0.5
16,569	-		Atu3024	0.11	+1.3
16,603	+		Atu3024	0.13	+0.8
16,672	-		Atu3024	0.17	-0.3
16,739	-		Atu3024	0.22	+1.5
16,828	-		Atu3024	0.28	+0.8
16,841	-		Atu3024	0.28	+1.0
16,889	+		Atu3024	0.32	-0.1
16,893	-		Atu3024	0.32	+1.6
16,894	+		Atu3024	0.32	+0.8
16,899	+		Atu3024	0.32	+1.1
16,908	-		Atu3024	0.33	+0.8
16,908	-		Atu3024	0.33	+1.4
16,928	+		Atu3024	0.34	+1.3
16,928	+		Atu3024	0.34	+0.8
16,979	+		Atu3024	0.37	+1.2
16,994	+		Atu3024	0.38	+0.2
17,015	+		Atu3024	0.40	+1.1
17,211	-		Atu3024	0.53	+1.6
17,323	+		Atu3024	0.60	+0.9
17,336	+		Atu3024	0.61	+0.8
17,344	-		Atu3024	0.61	+1.0
17,344	-		Atu3024	0.61	+0.3