Strain Fitness in Agrobacterium fabrum C58 around Atu3010

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
5,738	+		Atu3009	0.21	+1.9
5,885	-		Atu3009	0.35	+2.5
6,549	+				+1.3
6,549	+				+2.0
6,647	-				+1.1
6,673	-				-0.3
6,678	-				+2.0
6,715	-		Atu3010	0.12	+1.3
6,736	+		Atu3010	0.14	+1.8
6,736	+		Atu3010	0.14	+2.0
6,736	+		Atu3010	0.14	+2.3
6,834	-		Atu3010	0.25	+2.3
6,854	-		Atu3010	0.27	+1.5
6,869	+		Atu3010	0.29	+1.0
6,912	-		Atu3010	0.33	+1.3
6,952	+		Atu3010	0.38	+1.2
7,007	+		Atu3010	0.44	+1.2
7,060	+		Atu3010	0.49	+1.7
7,111	-		Atu3010	0.55	+1.7
7,111	-		Atu3010	0.55	+1.3
7,111	-		Atu3010	0.55	+2.3
7,185	-		Atu3010	0.63	+2.1
7,194	+		Atu3010	0.64	+1.4
7,202	-		Atu3010	0.65	+1.7
7,311	+		Atu3010	0.77	+1.4
7,357	+		Atu3010	0.81	+1.7
7,364	+		Atu3010	0.82	+0.5
7,365	+		Atu3010	0.82	+1.6
7,366	-		Atu3010	0.82	+2.0
7,383	-		Atu3010	0.84	+1.9
7,403	+		Atu3010	0.86	+1.6
7,403	+		Atu3010	0.86	+3.3
7,411	-		Atu3010	0.87	+1.8
7,411	-		Atu3010	0.87	+1.4
7,411	-		Atu3010	0.87	+2.7
7,429	-		Atu3010	0.89	+2.4
7,515	+				+1.0
7,588	-		Atu3011	0.18	+1.7
7,678	-		Atu3011	0.43	+1.6
7,678	-		Atu3011	0.43	+1.4
7,758	-		Atu3011	0.66	+0.7
7,760	-		Atu3011	0.66	+1.7
7,945	-				+2.0
7,969	-				+1.1
7,993	+				+1.2
7,993	+				+1.5
8,001	-				+1.7
8,001	-				+2.1
8,001	-				+3.1
8,046	-				+2.1
8,046	-				+1.6
8,055	+				+1.5
8,069	+				+1.4
8,077	-				+1.3
8,161	+				+1.4
8,251	-		Atu3012	0.23	+1.3
8,268	+		Atu3012	0.25	+2.5
8,465	-		Atu3012	0.54	+2.5