Strain Fitness in Agrobacterium fabrum C58 around Atu3001

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
395	+				+2.3
638	+				+2.3
646	+				+1.5
1,050	+		Atu3001	0.15	+2.0
1,058	-		Atu3001	0.16	+2.2
1,109	-		Atu3001	0.23	+2.5
1,352	+		Atu3001	0.57	+2.3
1,436	+		Atu3001	0.69	+2.9
1,436	+		Atu3001	0.69	+2.3
1,738	+				+1.4
1,746	-				+2.5
1,746	-				+1.9
1,861	-				-0.3
1,935	-				+1.9
1,957	-				+1.6
2,273	-				+2.8
2,368	-				+2.7
2,550	+				+2.3
2,577	+				+2.7