Strain Fitness in Agrobacterium fabrum C58 around Atu1880

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,859,925	+		Atu1878	0.79	+0.3
1,859,925	+		Atu1878	0.79	-0.0
1,859,951	-				+1.5
1,859,995	-				-0.0
1,860,005	-				-0.1
1,860,020	-				+0.1
1,860,055	-				+0.4
1,860,055	-				+0.1
1,860,087	+				-0.3
1,860,096	-				+0.3
1,860,104	+				-0.4
1,860,104	+				+0.1
1,860,129	-		Atu1879	0.13	+0.1
1,860,204	-		Atu1879	0.23	+0.0
1,860,270	+		Atu1879	0.31	+0.5
1,860,316	+		Atu1879	0.37	-0.1
1,860,443	+		Atu1879	0.54	+0.1
1,860,451	-		Atu1879	0.55	+0.1
1,860,451	-		Atu1879	0.55	-2.5
1,860,458	+		Atu1879	0.56	-0.3
1,860,464	-		Atu1879	0.56	+0.1
1,860,640	-		Atu1879	0.79	-0.0
1,860,640	-		Atu1879	0.79	+0.3
1,860,650	+		Atu1879	0.80	-0.6
1,860,670	+		Atu1879	0.83	-0.7
1,860,678	-		Atu1879	0.84	-0.0
1,860,694	-		Atu1879	0.86	-0.1
1,860,842	-				+0.5
1,860,900	+				-0.1
1,860,925	-				-0.1
1,860,945	-				+1.2
1,860,951	-				+0.6
1,861,050	-		Atu1880	0.17	+1.5
1,861,161	-		Atu1880	0.31	+0.6
1,861,452	+		Atu1880	0.67	-0.2
1,861,611	-		Atu1880	0.87	+0.1
1,861,704	+				-0.3
1,861,717	+				-0.3
1,861,833	+		Atu1881	0.14	+0.7
1,861,841	-		Atu1881	0.15	-0.8
1,861,865	-		Atu1881	0.18	-0.4
1,861,918	+		Atu1881	0.25	-0.2
1,861,918	+		Atu1881	0.25	-0.3
1,861,926	-		Atu1881	0.26	+0.1
1,861,928	+		Atu1881	0.26	-0.2
1,861,955	+		Atu1881	0.29	-0.9
1,861,956	+		Atu1881	0.29	+0.3
1,861,975	+		Atu1881	0.32	+0.4
1,862,036	-		Atu1881	0.39	-0.0
1,862,057	-		Atu1881	0.41	+0.6
1,862,077	+		Atu1881	0.44	-0.3
1,862,142	+		Atu1881	0.52	+0.3
1,862,182	+		Atu1881	0.56	-0.3
1,862,245	-		Atu1881	0.64	+0.8
1,862,359	-		Atu1881	0.78	+0.5
1,862,385	+		Atu1881	0.81	+0.1
1,862,554	+				-0.7
1,862,628	-				-0.7
1,862,643	-				-0.1
1,862,645	+				+0.2
1,862,666	-				+0.5