Strain Fitness in Agrobacterium fabrum C58 around Atu1566

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,552,114	+		Atu1564	0.61	-0.5
1,552,154	-		Atu1564	0.66	-0.1
1,552,255	-		Atu1564	0.77	-0.2
1,552,351	+		Atu1564	0.88	-0.1
1,552,359	-		Atu1564	0.89	+0.9
1,552,389	-				-0.1
1,552,448	+				-0.5
1,552,466	-				+0.3
1,552,476	-				+0.1
1,552,499	-				-0.5
1,552,503	+				+0.1
1,552,511	-				-0.0
1,552,517	+				+0.7
1,552,615	+		Atu1565	0.26	+0.5
1,552,728	-		Atu1565	0.45	+0.2
1,552,763	-		Atu1565	0.51	-0.6
1,552,873	-		Atu1565	0.69	+0.0
1,553,170	-		Atu1566	0.25	+0.3
1,553,290	+		Atu1566	0.74	+1.3
1,553,332	-				-0.1
1,553,378	-				-0.1
1,553,590	-				+0.4
1,553,645	+				-0.3
1,553,688	+		Atu1567	0.12	-0.5
1,553,827	-		Atu1567	0.24	-0.1
1,553,837	-		Atu1567	0.24	-0.6
1,553,858	+		Atu1567	0.26	+0.3
1,553,871	+		Atu1567	0.27	-0.2
1,553,917	+		Atu1567	0.31	-1.4
1,553,953	+		Atu1567	0.34	+0.0
1,553,954	-		Atu1567	0.34	-0.0
1,554,087	+		Atu1567	0.45	-0.2
1,554,146	+		Atu1567	0.50	-0.6
1,554,313	+		Atu1567	0.64	+0.6