Strain Fitness in Agrobacterium fabrum C58 around Atu1260

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1259 and Atu1260 are separated by 84 nucleotidesAtu1260 and Atu1261 are separated by 83 nucleotides Atu1259: Atu1259 - ATP-dependent Clp protease, ATP-binding subunit, at 1,247,190 to 1,248,467 Atu1259 Atu1260: Atu1260 - hypothetical protein, at 1,248,552 to 1,248,797 Atu1260 Atu1261: Atu1261 - ATP-dependent protease LA, at 1,248,881 to 1,251,298 Atu1261 Position (kb) 1248 1249Strain fitness (log2 ratio) -1 0 1at 1248.419 kb on + strandat 1248.562 kb on - strandat 1248.594 kb on - strand, within Atu1260at 1248.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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1,248,419 + -0.3
1,248,562 - +0.3
1,248,594 - Atu1260 0.17 +0.2
1,248,831 + -0.7

Or see this region's nucleotide sequence